CF504670

Overview
NameCF504670
Unique NameCF504670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length290
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504670 vs. ExPASy Swiss-Prot
Match: RPN1_PIG (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Sus scrofa GN=RPN1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.237e-13
Identity = 36/91 (39.56%), Postives = 59/91 (64.84%), Query Frame = 3
Query:   21 ARGISVSAPFPVNQW-EETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVYYKFSKLSMLREPFMLIFGFFSLFGAGIVYMHVDMSISKSSA 290
            A+ I V +P+ +++  +E   ++LD  GRPV+V  K N+V +H Q   V+Y F+K+ ML+EP +++  F+ LF   IVY+ +D SI+K  A
Sbjct:  379 AKNIQVDSPYEISRAPDELHYTYLDTFGRPVIVAHKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIVYVRLDFSITKDPA 469          
BLAST of CF504670 vs. ExPASy Swiss-Prot
Match: RPN1_RAT (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Rattus norvegicus GN=Rpn1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.064e-12
Identity = 35/91 (38.46%), Postives = 59/91 (64.84%), Query Frame = 3
Query:   21 ARGISVSAPFPVNQW-EETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVYYKFSKLSMLREPFMLIFGFFSLFGAGIVYMHVDMSISKSSA 290
            A+ I V +P+ +++  +E   ++LD  GRPV+V  K N+V +H Q   V+Y F+K+ ML+EP +++  F+ LF   I+Y+ +D SI+K  A
Sbjct:  376 AKNIQVDSPYDISRAPDELHYTYLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITKDPA 466          
BLAST of CF504670 vs. ExPASy Swiss-Prot
Match: RPN1_MOUSE (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Mus musculus GN=Rpn1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.064e-12
Identity = 35/91 (38.46%), Postives = 59/91 (64.84%), Query Frame = 3
Query:   21 ARGISVSAPFPVNQW-EETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVYYKFSKLSMLREPFMLIFGFFSLFGAGIVYMHVDMSISKSSA 290
            A+ I V +P+ +++  +E   ++LD  GRPV+V  K N+V +H Q   V+Y F+K+ ML+EP +++  F+ LF   I+Y+ +D SI+K  A
Sbjct:  379 AKNIQVDSPYDISRAPDELHYTYLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITKDPA 469          
BLAST of CF504670 vs. ExPASy Swiss-Prot
Match: RPN1_PONAB (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Pongo abelii GN=RPN1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.389e-12
Identity = 34/91 (37.36%), Postives = 59/91 (64.84%), Query Frame = 3
Query:   21 ARGISVSAPFPVNQW-EETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVYYKFSKLSMLREPFMLIFGFFSLFGAGIVYMHVDMSISKSSA 290
            A+ I + +P+ +++  +E   ++LD  GRPV+V  K N+V +H Q   V+Y F+K+ ML+EP +++  F+ LF   I+Y+ +D SI+K  A
Sbjct:  378 AKNIEIDSPYEISRAPDELHYTYLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITKDPA 468          
BLAST of CF504670 vs. ExPASy Swiss-Prot
Match: RPN1_MACFA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Macaca fascicularis GN=RPN1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.389e-12
Identity = 34/91 (37.36%), Postives = 59/91 (64.84%), Query Frame = 3
Query:   21 ARGISVSAPFPVNQW-EETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVYYKFSKLSMLREPFMLIFGFFSLFGAGIVYMHVDMSISKSSA 290
            A+ I + +P+ +++  +E   ++LD  GRPV+V  K N+V +H Q   V+Y F+K+ ML+EP +++  F+ LF   I+Y+ +D SI+K  A
Sbjct:  378 AKNIEIDSPYEISRAPDELHYTYLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITKDPA 468          
BLAST of CF504670 vs. ExPASy Swiss-Prot
Match: RPN1_HUMAN (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Homo sapiens GN=RPN1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.389e-12
Identity = 34/91 (37.36%), Postives = 59/91 (64.84%), Query Frame = 3
Query:   21 ARGISVSAPFPVNQW-EETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVYYKFSKLSMLREPFMLIFGFFSLFGAGIVYMHVDMSISKSSA 290
            A+ I + +P+ +++  +E   ++LD  GRPV+V  K N+V +H Q   V+Y F+K+ ML+EP +++  F+ LF   I+Y+ +D SI+K  A
Sbjct:  378 AKNIEIDSPYEISRAPDELHYTYLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITKDPA 468          
BLAST of CF504670 vs. ExPASy Swiss-Prot
Match: OST1_DICDI (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Dictyostelium discoideum GN=ost1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.620e-11
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 3
Query:   21 ARGISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVYYKFSKLSMLREPFMLIFGFFSLFGAGIVYMHVDMSISKS 284
            A  I V APF   Q EE + ++LD  GRPVVV+   +   E+ ++ QV Y  S LS+  EP ++I   F+L    I+Y   D+SISKS
Sbjct:  370 ATDIKVHAPFAFTQSEENRKTYLDTIGRPVVVINIKDTASENYRYIQVTYNLSSLSIFHEPLLVIGAVFTLCIFIILYSRFDLSISKS 457          
The following BLAST results are available for this feature:
BLAST of CF504670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RPN1_PIG6.237e-1339.56Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
RPN1_RAT1.064e-1238.46Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
RPN1_MOUSE1.064e-1238.46Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
RPN1_PONAB1.389e-1237.36Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
RPN1_MACFA1.389e-1237.36Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
RPN1_HUMAN1.389e-1237.36Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
OST1_DICDI2.620e-1142.05Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-159 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504670 ID=CF504670; Name=CF504670; organism=Citrus sinensis; type=EST; length=290bp
TTTTGGGCTGCAGGGGTTCGGCACGAGGTATATCTGTTTCTGCTCCATTT
CCTGTAAATCAGTGGGAAGAGACCAAATTGTCACATTTGGATCTTACTGG
TAGACCTGTGGTTGTGCTGCAAAAGACTAATGTTGTGCCAGAGCATAATC
AATTTTTCCAGGTCTATTACAAGTTCTCCAAACTTTCAATGCTTAGAGAG
CCATTTATGTTAATTTTTGGCTTTTTCTCTCTTTTTGGTGCTGGCATCGT
ATATATGCATGTTGACATGTCAATTTCCAAATCATCTGCA
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