CF504676

Overview
NameCF504676
Unique NameCF504676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length325
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504676 vs. ExPASy Swiss-Prot
Match: RECG_SYNY3 (ATP-dependent DNA helicase recG OS=Synechocystis sp. (strain PCC 6803) GN=recG PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.574e-16
Identity = 42/105 (40.00%), Postives = 75/105 (71.43%), Query Frame = 2
Query:   14 LALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPGIEQSEQLPQLRAAASDLETISQR-FQDYSCGLLHGKMKSDQKDEAL 325
            LAL L+GD+ ++QI +LPPGR PI T +I   E+    +Y+++  E+  G +VY+++P IE+SE+L  ++AA  + + ++++ F +++ GLLHG++KS +K+ AL
Sbjct:  568 LALTLHGDLEVSQIDELPPGRQPIHTSVITAKER--PQMYELIRREVAQGRQVYIIFPAIEESEKL-DIKAAVEEHKYLTEKIFPNFNIGLLHGRLKSAEKEAAL 669          
BLAST of CF504676 vs. ExPASy Swiss-Prot
Match: RECG_AQUAE (ATP-dependent DNA helicase recG OS=Aquifex aeolicus GN=recG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.065e-15
Identity = 44/100 (44.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:   14 LALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPGIEQSEQLPQLRAAASDLETISQRFQDYSCGLLHGKMKSDQK 313
            LAL++YGD+ ++ I +LPPGR  + T +   ++K  E VYK + +EL+ G KVY++YP IE+SE+L  L+AA  + E   + F D    LLHGKM   +K
Sbjct:  525 LALSIYGDLDISIIDELPPGRKEVITKLYFESQK--EEVYKKVEEELKKGNKVYVIYPLIEESEKL-NLKAATEEYERWKKLFPDRKVLLLHGKMPDKEK 621          
BLAST of CF504676 vs. ExPASy Swiss-Prot
Match: RECG_STAES (ATP-dependent DNA helicase recG OS=Staphylococcus epidermidis (strain ATCC 12228) GN=recG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.379e-12
Identity = 36/104 (34.62%), Postives = 62/104 (59.62%), Query Frame = 2
Query:   14 LALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPGIEQSEQLPQLRAAASDLETISQRFQDYSCGLLHGKMKSDQKDEAL 325
            LA++++G+M ++ I  LP GR PIKT   +  +  Y+ V   M +EL+ G + Y++ P IE SE L  ++   +  E++   + +   GLLHGKM ++ KD+ +
Sbjct:  422 LAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQ--YDQVLAQMSNELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQSDYGNEKVGLLHGKMSAEDKDQVM 523          
BLAST of CF504676 vs. ExPASy Swiss-Prot
Match: RECG_STAEQ (ATP-dependent DNA helicase recG OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=recG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.353e-12
Identity = 36/104 (34.62%), Postives = 61/104 (58.65%), Query Frame = 2
Query:   14 LALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPGIEQSEQLPQLRAAASDLETISQRFQDYSCGLLHGKMKSDQKDEAL 325
            LA++++G+M ++ I  LP GR PIKT   +  +  Y+ V   M +EL+ G + Y++ P IE SE L  ++      E++   + +   GLLHGKM ++ KD+ +
Sbjct:  422 LAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQ--YDQVLAQMSNELKKGRQAYVICPLIESSEHLEDVQNVVELYESLQSDYGNEKVGLLHGKMTAEDKDQVM 523          
BLAST of CF504676 vs. ExPASy Swiss-Prot
Match: RECG_STAAW (ATP-dependent DNA helicase recG OS=Staphylococcus aureus (strain MW2) GN=recG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.353e-12
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 2
Query:   14 LALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPGIEQSEQLPQLRAAASDLETISQRFQDYSCGLLHGKMKSDQKDEAL 325
            LA++++G+M ++ I  LP GR PI T   +  +  Y+ V   M  EL+ G + Y++ P IE SE L  ++   +  E++ Q +     GLLHGK+ +D+KDE +
Sbjct:  426 LAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQ--YDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVM 527          
BLAST of CF504676 vs. ExPASy Swiss-Prot
Match: RECG_STAAS (ATP-dependent DNA helicase recG OS=Staphylococcus aureus (strain MSSA476) GN=recG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.353e-12
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 2
Query:   14 LALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPGIEQSEQLPQLRAAASDLETISQRFQDYSCGLLHGKMKSDQKDEAL 325
            LA++++G+M ++ I  LP GR PI T   +  +  Y+ V   M  EL+ G + Y++ P IE SE L  ++   +  E++ Q +     GLLHGK+ +D+KDE +
Sbjct:  426 LAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQ--YDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVM 527          
BLAST of CF504676 vs. ExPASy Swiss-Prot
Match: RECG_STAAR (ATP-dependent DNA helicase recG OS=Staphylococcus aureus (strain MRSA252) GN=recG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.353e-12
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 2
Query:   14 LALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPGIEQSEQLPQLRAAASDLETISQRFQDYSCGLLHGKMKSDQKDEAL 325
            LA++++G+M ++ I  LP GR PI T   +  +  Y+ V   M  EL+ G + Y++ P IE SE L  ++   +  E++ Q +     GLLHGK+ +D+KDE +
Sbjct:  426 LAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQ--YDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVM 527          
BLAST of CF504676 vs. ExPASy Swiss-Prot
Match: RECG_STAAN (ATP-dependent DNA helicase recG OS=Staphylococcus aureus (strain N315) GN=recG PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.353e-12
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 2
Query:   14 LALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPGIEQSEQLPQLRAAASDLETISQRFQDYSCGLLHGKMKSDQKDEAL 325
            LA++++G+M ++ I  LP GR PI T   +  +  Y+ V   M  EL+ G + Y++ P IE SE L  ++   +  E++ Q +     GLLHGK+ +D+KDE +
Sbjct:  426 LAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQ--YDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVM 527          
BLAST of CF504676 vs. ExPASy Swiss-Prot
Match: RECG_STAAM (ATP-dependent DNA helicase recG OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=recG PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.353e-12
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 2
Query:   14 LALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPGIEQSEQLPQLRAAASDLETISQRFQDYSCGLLHGKMKSDQKDEAL 325
            LA++++G+M ++ I  LP GR PI T   +  +  Y+ V   M  EL+ G + Y++ P IE SE L  ++   +  E++ Q +     GLLHGK+ +D+KDE +
Sbjct:  426 LAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQ--YDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVM 527          
BLAST of CF504676 vs. ExPASy Swiss-Prot
Match: RECG_STAAC (ATP-dependent DNA helicase recG OS=Staphylococcus aureus (strain COL) GN=recG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.353e-12
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 2
Query:   14 LALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPGIEQSEQLPQLRAAASDLETISQRFQDYSCGLLHGKMKSDQKDEAL 325
            LA++++G+M ++ I  LP GR PI T   +  +  Y+ V   M  EL+ G + Y++ P IE SE L  ++   +  E++ Q +     GLLHGK+ +D+KDE +
Sbjct:  426 LAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQ--YDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVM 527          
The following BLAST results are available for this feature:
BLAST of CF504676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RECG_SYNY31.574e-1640.00ATP-dependent DNA helicase recG OS=Synechocystis s... [more]
RECG_AQUAE5.065e-1544.00ATP-dependent DNA helicase recG OS=Aquifex aeolicu... [more]
RECG_STAES1.379e-1234.62ATP-dependent DNA helicase recG OS=Staphylococcus ... [more]
RECG_STAEQ2.353e-1234.62ATP-dependent DNA helicase recG OS=Staphylococcus ... [more]
RECG_STAAW2.353e-1235.58ATP-dependent DNA helicase recG OS=Staphylococcus ... [more]
RECG_STAAS2.353e-1235.58ATP-dependent DNA helicase recG OS=Staphylococcus ... [more]
RECG_STAAR2.353e-1235.58ATP-dependent DNA helicase recG OS=Staphylococcus ... [more]
RECG_STAAN2.353e-1235.58ATP-dependent DNA helicase recG OS=Staphylococcus ... [more]
RECG_STAAM2.353e-1235.58ATP-dependent DNA helicase recG OS=Staphylococcus ... [more]
RECG_STAAC2.353e-1235.58ATP-dependent DNA helicase recG OS=Staphylococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-165 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504676 ID=CF504676; Name=CF504676; organism=Citrus sinensis; type=EST; length=325bp
TTCGGGCTGCAGGCTTGCTTTGGCATTATATGGGGATATGTCCTTAACAC
AGATAACTGACTTACCTCCAGGAAGGATACCTATTAAGACCTACATCATT
GAAGGAAATGAGAAGGGCTATGAGAATGTGTACAAGATGATGCTTGACGA
ACTGCAATCAGGTGGAAAAGTGTACCTTGTGTATCCTGGCATTGAACAAT
CTGAGCAGTTGCCCCAGCTCCGTGCTGCTGCTTCAGATCTTGAAACTATA
TCTCAAAGATTTCAGGATTACAGCTGCGGGTTGTTGCATGGGAAAATGAA
GAGTGACCAAAAAGATGAGGCTTTA
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