CF504792

Overview
NameCF504792
Unique NameCF504792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504792 vs. ExPASy Swiss-Prot
Match: GSA1_ARATH (Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic OS=Arabidopsis thaliana GN=GSA1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.173e-33
Identity = 68/105 (64.76%), Postives = 81/105 (77.14%), Query Frame = 3
Query:   63 MAATITXXXXXXXXSCSSKLTNRFXXXXXXXXXXVKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYV 377
            M+AT+T        SCSSK++ R           +KMSVSV+E++K+F+L+KSEEAFN AK LMPGGVNSPVRAFKSVGGQP++ DSVKGS MWDIDGNEYIDYV
Sbjct:    1 MSATLTGSGTALGFSCSSKISKRVSSSPASNRCCIKMSVSVDEKKKSFSLQKSEEAFNAAKNLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYV 105          
BLAST of CF504792 vs. ExPASy Swiss-Prot
Match: GSA_BRANA (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Brassica napus GN=GSA PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.056e-32
Identity = 69/105 (65.71%), Postives = 81/105 (77.14%), Query Frame = 3
Query:   63 MAATITXXXXXXXXSCSSKLTNRFXXXXXXXXXXVKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYV 377
            M+AT+T        SCSSK++ R           +KMSVSV+E++K+FTL+KSEEAFN AK LMPGGVNSPVRAFKSVGGQP++ DSVKGS MWDIDGNEYIDYV
Sbjct:    1 MSATLTGSGTALGFSCSSKISKRVSSSPSTRCS-IKMSVSVDEKKKSFTLQKSEEAFNAAKNLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYV 104          
BLAST of CF504792 vs. ExPASy Swiss-Prot
Match: GSA2_ARATH (Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic OS=Arabidopsis thaliana GN=GSA2 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 5.600e-30
Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = 3
Query:   63 MAATITXXXXXXXXSCSSKLTNRFXXXXXXXXXXVKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYV 377
            MAAT+T        SCS+K + R           +KMSVSVEE+ K FTL+KSEEAFN AK LMPGGVNSPVRAFKSVGGQP+V DS KGS + DIDGNEYIDYV
Sbjct:    1 MAATLTGSGIALGFSCSAKFSKR--ASSSSNRRCIKMSVSVEEKTKKFTLQKSEEAFNAAKNLMPGGVNSPVRAFKSVGGQPVVMDSAKGSRIRDIDGNEYIDYV 103          
BLAST of CF504792 vs. ExPASy Swiss-Prot
Match: GSA_ORYSJ (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Oryza sativa subsp. japonica GN=GSA PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.992e-27
Identity = 56/71 (78.87%), Postives = 64/71 (90.14%), Query Frame = 3
Query:  165 VKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYV 377
            V+ ++SVE+  K +T++KSEE FN AKELMPGGVNSPVRAFKSVGGQPIVFDSVKGS MWD+DGNEYIDYV
Sbjct:   39 VRAAISVEKGEKAYTVEKSEEIFNAAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSRMWDVDGNEYIDYV 109          
BLAST of CF504792 vs. ExPASy Swiss-Prot
Match: GSA_HORVU (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Hordeum vulgare GN=GSA PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 3.398e-27
Identity = 57/71 (80.28%), Postives = 65/71 (91.55%), Query Frame = 3
Query:  165 VKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYV 377
            V+ +VS++E  K +T++KSEE FN AKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWD+DGNEYIDYV
Sbjct:   32 VRAAVSIDE--KAYTVQKSEEIFNAAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDVDGNEYIDYV 100          
BLAST of CF504792 vs. ExPASy Swiss-Prot
Match: GSA_TOBAC (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Nicotiana tabacum GN=GSA PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.437e-27
Identity = 57/71 (80.28%), Postives = 65/71 (91.55%), Query Frame = 3
Query:  165 VKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYV 377
            +KM+ SV+E++K FTL+KSEEAF+ AKELMPGGVNSPVRAFKSVGGQPI+ DSVKGS M DIDGNEYIDYV
Sbjct:   39 IKMTASVDEKKKTFTLQKSEEAFSKAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYV 109          
BLAST of CF504792 vs. ExPASy Swiss-Prot
Match: GSA_SOLLC (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.885e-27
Identity = 56/71 (78.87%), Postives = 65/71 (91.55%), Query Frame = 3
Query:  165 VKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYV 377
            ++M+ SV+E++K FTL+KSEEAF+ AKELMPGGVNSPVRAFKSVGGQPI+ DSVKGS M DIDGNEYIDYV
Sbjct:   42 IRMTASVDEKKKTFTLEKSEEAFSKAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYV 112          
BLAST of CF504792 vs. ExPASy Swiss-Prot
Match: GSA_SOYBN (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Glycine max GN=GSA1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.153e-25
Identity = 57/72 (79.17%), Postives = 61/72 (84.72%), Query Frame = 3
Query:  165 VKMSVSVEEQRKN-FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYV 377
            V M+VS++ +  N  TL KSEEAF  AKELMPGGVNSPVRAFKSVGGQPIV DSVKGS MWDIDGNEYIDYV
Sbjct:   26 VAMAVSIDPKTDNKLTLTKSEEAFAAAKELMPGGVNSPVRAFKSVGGQPIVIDSVKGSRMWDIDGNEYIDYV 97          
BLAST of CF504792 vs. ExPASy Swiss-Prot
Match: GSA_SYNP2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=hemL PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.358e-20
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 3
Query:  216 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYV 377
            KSEE F+ A++LMPGGV+SPVRAFKSVGGQPIVFD VKGS +WD+DGNEYIDYV
Sbjct:   10 KSEEIFSAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKGSRVWDVDGNEYIDYV 63          
BLAST of CF504792 vs. ExPASy Swiss-Prot
Match: GSA_THEEB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermosynechococcus elongatus (strain BP-1) GN=hemL PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.080e-20
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 3
Query:  204 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYV 377
            F   KS+E F  A++LMPGGV+SPVRAFKSVGGQPIVFD VKG+H+WD+DGN+YIDYV
Sbjct:   11 FQTTKSQEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDHVKGAHIWDVDGNQYIDYV 68          
The following BLAST results are available for this feature:
BLAST of CF504792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 341
Match NameE-valueIdentityDescription
GSA1_ARATH3.173e-3364.76Glutamate-1-semialdehyde 2,1-aminomutase 1, chloro... [more]
GSA_BRANA2.056e-3265.71Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA2_ARATH5.600e-3064.76Glutamate-1-semialdehyde 2,1-aminomutase 2, chloro... [more]
GSA_ORYSJ1.992e-2778.87Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_HORVU3.398e-2780.28Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_TOBAC4.437e-2780.28Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_SOLLC9.885e-2778.87Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_SOYBN4.153e-2579.17Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_SYNP22.358e-2081.48Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_THEEB3.080e-2074.14Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-282 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-21_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504792 ID=CF504792; Name=CF504792; organism=Citrus sinensis; type=EST; length=378bp
CAGTTTCTTATCTTCATTGACCGAGGAAAAGAGAAAGAGACTTCAGAGAG
AGCGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGG
GCTTTCATGTTCATCAAAGCTCACCAACAGATTTTCTTCTTCTGCTGGAT
CCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAGGAAA
AATTTCACTTTAAAAAAATCTGAAGAAGCTTTCAATGTCGCCAAGGAATT
GATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTG
GTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATATC
GATGGCAATGAGTACATTGACTATGTAG
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