CF504805

Overview
NameCF504805
Unique NameCF504805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length304
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504805 vs. ExPASy Swiss-Prot
Match: AB19I_ARATH (ABC transporter I family member 19 OS=Arabidopsis thaliana GN=ABCI19 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.182e-18
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = 3 
Query:  129 NSIKVCGMQFSYEGNDKPPLFYDFNLDISPGSRCLLVGANGSGKTTLLKILAGKHMVG 302
            ++I+V GMQF+YE  D  P+F+DFNLD+  GSRCLLVGANGSGKTTLLKILAGKHMVG
Sbjct:   12 DAIRVSGMQFAYEVED--PIFFDFNLDLPAGSRCLLVGANGSGKTTLLKILAGKHMVG 67
[Close]
BLAST of CF504805 vs. ExPASy Swiss-Prot
Match: AB21I_ARATH (ABC transporter I family member 21 OS=Arabidopsis thaliana GN=ABCI21 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.850e-18
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 3 
Query:  132 SIKVCGMQFSYEGNDKPPLFYDFNLDISPGSRCLLVGANGSGKTTLLKILAGKHMVG 302
            +I+V GMQFSY+  D  P+F+DFNLD+  GSRCLLVGANGSGKTTLLKILAGKHMVG
Sbjct:   12 AIRVSGMQFSYDVQD--PIFFDFNLDLPAGSRCLLVGANGSGKTTLLKILAGKHMVG 66
[Close]
BLAST of CF504805 vs. ExPASy Swiss-Prot
Match: AB20I_ARATH (ABC transporter I family member 20 OS=Arabidopsis thaliana GN=ABCI20 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.880e-12
Identity = 33/74 (44.59%), Postives = 50/74 (67.57%), Query Frame = 3 
Query:   96 MADGMNENEKLNSIKVCGMQFSYEGND------KPPLFYDFNLDISPGSRCLLVGANGSGKTTLLKILAGKHMV 299
            MA    E ++ +++++ G++F+Y G D        PL  DF++ ++   RCLLVG+NG+GKTT+LKIL GKHMV
Sbjct:    1 MAVTEEEKKRNSTVEISGLRFTYPGIDGHPPPGSKPLIEDFSITLNSSDRCLLVGSNGAGKTTILKILGGKHMV 74
The following BLAST results are available for this feature:
BLAST of CF504805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AB19I_ARATH2.182e-1875.86ABC transporter I family member 19 OS=Arabidopsis ... [more]
AB21I_ARATH2.850e-1877.19ABC transporter I family member 21 OS=Arabidopsis ... [more]
AB20I_ARATH8.880e-1244.59ABC transporter I family member 20 OS=Arabidopsis ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-296 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-21_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504805 ID=CF504805; Name=CF504805; organism=Citrus sinensis; type=EST; length=304bp
AAAACACACGTGTCAAAATACTACTGGTGTGTTGTATATCTAAAATCGTG
AATACTACGTCTGTTCCATGTACTGCGTTTGCTCACGGAAGGAAAATGGC
GGACGGAATGAATGAGAATGAGAAATTGAACAGTATCAAAGTATGCGGCA
TGCAATTTTCTTACGAGGGGAACGATAAGCCTCCTCTATTCTACGATTTC
AACCTCGATATCTCGCCGGGATCTCGTTGCCTTCTCGTTGGCGCCAATGG
ATCTGGAAAAACGACGCTGTTAAAGATTTTGGCGGGAAAGCATATGGTGG
GAGG
back to top