CF504855

Overview
NameCF504855
Unique NameCF504855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length220
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504855 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.307e-11
Identity = 27/54 (50.00%), Postives = 42/54 (77.78%), Query Frame = 2 
Query:   59 CWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGK 220
            C  LL +V  F K++E  LDALCD ++P  +TE ++++REGDP+DEM+F+++GK
Sbjct:  477 CLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGK 530
[Close]
BLAST of CF504855 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.640e-11
Identity = 25/54 (46.30%), Postives = 44/54 (81.48%), Query Frame = 2 
Query:   59 CWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGK 220
            C NL+++V  F  ++E  LDA+C+ +KP+ FTE T+++REGDP++EM+F+++G+
Sbjct:  493 CLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGR 546
[Close]
BLAST of CF504855 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.640e-11
Identity = 28/54 (51.85%), Postives = 43/54 (79.63%), Query Frame = 2 
Query:   59 CWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGK 220
            C +LLKKV  F  ++E  LDA+CD +KP  +TE+++ IREGDP++EM+F+++GK
Sbjct:  465 CLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGK 518
[Close]
BLAST of CF504855 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.621e-11
Identity = 24/54 (44.44%), Postives = 44/54 (81.48%), Query Frame = 2 
Query:   59 CWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGK 220
            C NL+++V  F  ++E  LDA+C+ +KP+ +TE T+++REGDP++EM+F+++G+
Sbjct:  499 CLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGR 552
The following BLAST results are available for this feature:
BLAST of CF504855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CNGC1_ARATH3.307e-1150.00Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNGC7_ARATH5.640e-1146.30Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNG13_ARATH5.640e-1151.85Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNGC8_ARATH9.621e-1144.44Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-346 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-22_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504855 ID=CF504855; Name=CF504855; organism=Citrus sinensis; type=EST; length=220bp
ACAAAATCTACTCAATAATCTTCCCAATGAACTCAGAAGAGAACTAAAGC
GCGAACTTTGCTGGAATCTGCTAAAGAAAGTACAAGAGTTCAGGAAGCTA
AATGAGGTAACATTGGATGCTCTATGCGATTGCGTAAAACCAACTTTCTT
CACCGAGCACACTCACTTAATTCGTGAAGGAGACCCAATTGACGAGATGA
TCTTTTTAGTGCAAGGCAAA
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