CF509111

Overview
NameCF509111
Unique NameCF509111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length382
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF509111 vs. ExPASy Swiss-Prot
Match: Y1222_ARATH (Uncharacterized protein At1g32220, chloroplastic OS=Arabidopsis thaliana GN=At1g32220 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.585e-16
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 3 
Query:   72 SGRSSLKDSWAESVVWHQGXXXXXXXXXXXXIGVNSVISCVGGFGSNSYMYKINGTANINAVKAAKEQGVKRFVFVSAADFGLVNYLL-RGYYEGKRATEKELM 380
            SGR + +DSW + V W  G            +G  +V+S +GGFG+   M +ING AN+ AV AAK+ GV +FV ++  D+ L  ++L  GY+ GKR  E EL+
Sbjct:   95 SGRPNFEDSWLDQVTWVTGDVFYLNWDEVL-LGATAVVSTIGGFGNEEQMKRINGEANVTAVNAAKDFGVPKFVLITVHDYNLPPFILSNGYFTGKRNAEAELL 197
The following BLAST results are available for this feature:
BLAST of CF509111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1222_ARATH4.585e-1640.38Uncharacterized protein At1g32220, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_124000-616 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-74_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509111 ID=CF509111; Name=CF509111; organism=Citrus sinensis; type=EST; length=382bp
CTTCAATATGATGAAGAGGATTCTAATGTCACGGTTTGCTCCATTCACAA
ACCTCCACTGCTAGACTCTTGTCTGGAAGATCATCTCTTAAGGATTCTTG
GGCCGAAAGTGTGGTCTGGCATCAAGGAGATCTGCTCTCACCTGATTCAT
TAAAAGATTCACTGATTGGAGTGAACTCTGTGATCTCATGTGTTGGAGGT
TTCGGCTCAAATTCATATATGTACAAAATTAATGGGACCGCCAACATAAA
CGCTGTAAAAGCTGCTAAAGAGCAAGGTGTAAAAAGGTTTGTGTTTGTCT
CTGCTGCTGACTTTGGTTTGGTAAATTATTTACTACGGGGATATTATGAG
GGAAAGAGAGCCACTGAAAAAGAGTTAATGAC
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