CF509144

Overview
NameCF509144
Unique NameCF509144
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF509144 vs. ExPASy Swiss-Prot
Match: Y4115_ARATH (Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.857e-39
Identity = 92/160 (57.50%), Postives = 110/160 (68.75%), Query Frame = 2 
Query:    8 AVLTPRVPSTTTVKVKSSHCFALPCLXXXXXXXXXXXX-IKQVSES--RRFPLLQVRASSSEETSTVDADELFSDLKEKWDAIENKSTVLLYGGGAIVAVWLSSTIVGAINSVXXXXXXXXXXXXXYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE 478
            AV+ PRVP+ +T       C A+P L             +K VS +  ++  LL+ RASS EETS++D +EL +DLKEKWD +ENKSTVL+YGGGAIVAVWLSS +VGAINSV             YTGWFVYRYLLFKSSRKELA DIE+LKKKIAG+E
Sbjct:   12 AVMVPRVPAVST------RCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVELLKTRASS-EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGSE 164
The following BLAST results are available for this feature:
BLAST of CF509144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4115_ARATH8.857e-3957.50Uncharacterized protein At4g01150, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_124000-649 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-74_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509144 ID=CF509144; Name=CF509144; organism=Citrus sinensis; type=EST; length=675bp
GTACGCGGCGGTGTTAACTCCACGTGTCCCCTCAACCACCACCGTCAAAG
TCAAATCTTCTCACTGCTTTGCTCTTCCCTGCCTCCCTCCTCGTTCGTCA
ACGCCACCATTCTCTTCTTCCATTAAACAAGTTTCAGAGTCGAGAAGGTT
TCCTTTGCTTCAGGTTAGAGCCTCTTCCTCAGAAGAGACATCCACAGTTG
ATGCAGATGAACTTTTTTCAGACTTGAAGGAAAAGTGGGATGCCATTGAA
AACAAGTCCACGGTACTTCTCTATGGAGGTGGGGCAATAGTGGCTGTTTG
GTTATCCTCAACTATTGTTGGTGCCATCAATTCAGTGCCTTTGCTTCCCA
AACTCTTGGAGTTGATTGGACTTGGTTATACTGGATGGTTTGTCTACAGA
TACCTTCTCTTCAAGTCAAGCAGAAAAGAACTAGCCACGGATATTGAAGC
ACTGAAGAAGAAGATTGCTGGAACTGAATAGATTGTACATTCTGGAGGCA
ATTCATGTTTGTCCCTGATAGTCATTTATTTTGGTCCTCTATCATTGCAT
ATGAGGCACTTGTATCCTGTAGAGTAGGCTGCGTACGGATTCGTTTTATC
CCTGTATTTTCCAGTATATCCCTGGAATAAGAGATTTGACAAAGTTATGT
GTATGTCCAGGCATGATTGCTTCTG
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