CF509192

Overview
NameCF509192
Unique NameCF509192
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF509192 vs. ExPASy Swiss-Prot
Match: Y1480_ARATH (Uncharacterized protein At1g18480 OS=Arabidopsis thaliana GN=At1g18480 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.404e-47
Identity = 82/145 (56.55%), Postives = 107/145 (73.79%), Query Frame = 2 
Query:   71 FVDFTVSGGLFLPNPDPKTSQNVREPTTRLPRVDRLIAIGDLHGDLEKSKQALRLAGLINGSDQWTGGTATVVQIGDVLDRGDDXXXXXXXXXXXXREAEKSGGKFITMNGNHEIMNIEADFRYATEMGLKEFEDWANWY*LATK 505
            FVD++VSG +FLP  DP +   + +  TR  + +RL+AIGDLHGDLEKS++A ++AGLI+ SD+WTGG+  VVQ+GDVLDRG +            REAE++GGK +TMNGNHEIMNIE DFRY T+ GL+EF+ WA+WY L  K
Sbjct:   25 FVDYSVSG-IFLPQ-DPSSQNEILQ--TRFEKPERLVAIGDLHGDLEKSREAFKIAGLIDSSDRWTGGSTMVVQVGDVLDRGGEELKILYFLEKLKREAERAGGKILTMNGNHEIMNIEGDFRYVTKKGLEEFQIWADWYCLGNK 165

HSP 2 Score: 41.5874 bits (96), Expect = 2.404e-47
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 1 
Query:  493 IGNKMKSLCVGLEKPKDLFSGIPLA 567
            +GNKMK+LC GL+KPKD + GIP++
Sbjct:  162 LGNKMKTLCSGLDKPKDPYEGIPMS 186
[Close]
BLAST of CF509192 vs. ExPASy Swiss-Prot
Match: YQJ7_SCHPO (Uncharacterized protein C1840.07c OS=Schizosaccharomyces pombe GN=SPCC1840.07c PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.292e-15
Identity = 42/114 (36.84%), Postives = 60/114 (52.63%), Query Frame = 2 
Query:  107 PNPDPKTSQNVREPTTRLPRVDRLIAIGDLHGDLEKSKQALRLAGLING--SDQWTGGTATVVQIGDVLDRGDDXXXXXXXXXXXXREAEKSGGKFITMNGNHEIMNIEADFRY 442
            PN        ++ PT        + AIGD+HGD   +   L  AG+++     +WT G AT+VQ GDV+DRG D            ++AEK GG+ + + GNHE MN + D+RY
Sbjct:   43 PNFKGNVEAKIKYPTV-------VYAIGDIHGDFPNALDVLSAAGVVSPVFPHEWTAGNATLVQTGDVVDRGPDTRKLFRWFNDLHKQAEKHGGRVVRLLGNHEFMNAKGDWRY 149
The following BLAST results are available for this feature:
BLAST of CF509192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y1480_ARATH2.404e-4756.55Uncharacterized protein At1g18480 OS=Arabidopsis t... [more]
YQJ7_SCHPO7.292e-1536.84Uncharacterized protein C1840.07c OS=Schizosacchar... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_124000-697 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-75_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509192 ID=CF509192; Name=CF509192; organism=Citrus sinensis; type=EST; length=605bp
AAGGAGACAGAACACAAAAACCCTTTATGCAAAAACGTGCCTTCCTTACT
CTCTTCATTCGTAGACACCTTTCGTCGATTTCACAGTCAGCGGTGGCCTT
TTCTTACCGAACCCAGATCCCAAAACTTCCCAAAATGTTCGCGAACCCAC
CACGCGCCTCCCACGCGTTGATCGTCTTATTGCCATCGGTGACCTTCATG
GGGACTTGGAGAAATCAAAGCAAGCGCTCAGATTGGCTGGCTTGATCAAC
GGTTCTGATCAATGGACTGGTGGGACGGCCACTGTTGTACAAATTGGTGA
TGTACTGGATCGAGGTGATGATGAGATCAAGATTCTTTATTTGTTGGAGA
AATTGAAGAGGGAAGCTGAGAAAAGCGGAGGTAAATTTATTACTATGAAT
GGCAATCATGAAATTATGAACATTGAAGCTGATTTTAGATATGCTACTGA
AATGGGTTTAAAAGAGTTTGAGGATTGGGCTAATTGGTATTGATTGGCAA
CAAAATGAAATCTTTATGTGTAGGGTTAGAAAAGCCGAAAGATTTGTTTA
GTGGGATTCCTTTAGCTTTAAGAGTATGGCTAAAGAGTACCATAATGGTG
TTAGG
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