CF509201

Overview
NameCF509201
Unique NameCF509201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509201 vs. ExPASy Swiss-Prot
Match: CAF1H_ARATH (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.839e-41
Identity = 97/217 (44.70%), Postives = 128/217 (58.99%), Query Frame = 1
Query:   70 MRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLEGLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEM 720
            M  ++  L  +  ++IDTEFP  LR T ++A   E Y D+ F+VD   LIQLG+TL D  G+I  T+E NFSDF +  D     SI+ L+ +GLD  KIR++GI    F       L K R N+ WVTFHG YD+AYL+K FT +ALP T+E FS   A    SV+D+KV+AG C             A    + R G AHHAGS++ LTA VFA++
Sbjct:    1 MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRIGGTWEINFSDFGVD-DARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAGRC-EGLSSRLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKV 215          
BLAST of CF509201 vs. ExPASy Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.557e-39
Identity = 101/228 (44.30%), Postives = 133/228 (58.33%), Query Frame = 1
Query:   43 VWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGK-ISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLEGLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAF-SGVAALFFQSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEM 720
            VW  N +  M  +   L   N ++IDTEFPG L+ TP +A     Y D+KFNVD THLIQLG+TL    GK I+ T+E N SDF+  K L    SI  LK++GLD DKIR++GI    F   F + L++    ++WVTF G YD AYL+K  T   LP T++ F   V  L  + V+D+K +AG C             A +L ++R G AHHAGSDS LTA VF ++
Sbjct:    5 VWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLIQLGLTLF---GKGITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDVKKMAGLC-SGLSSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKL 228          
BLAST of CF509201 vs. ExPASy Swiss-Prot
Match: CAF1C_ARATH (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana GN=CAF1-3 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.457e-37
Identity = 101/228 (44.30%), Postives = 126/228 (55.26%), Query Frame = 1
Query:   43 VWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLEGLSKHRENLKWVTFHGLYDVAYLVKIFT-NDALPPTAEAF-SGVAALFFQSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEM 720
            VW  N E+ M  +   L   + ++IDTEFPG L+ TP +A     Y D+KFNVD THLIQLG TL D  G  + T+E N SDFD  K      SI  LK +GL+ DKIR++GI    F   F + L++    + WV F G YD AYLVK  T    LP T E F   V  L  + VFD+K +A  C             A +L +KR G AHHAGSDS LTA VF ++
Sbjct:    9 VWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLIQLGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDVKKIAESC-SGLSSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 234          
BLAST of CF509201 vs. ExPASy Swiss-Prot
Match: CAF1D_ARATH (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana GN=CAF1-4 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.240e-37
Identity = 101/228 (44.30%), Postives = 126/228 (55.26%), Query Frame = 1
Query:   43 VWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLEGLSKHRENLKWVTFHGLYDVAYLVKIFT-NDALPPTAEAF-SGVAALFFQSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEM 720
            VW  N E+ M  +   L  F+ ++IDTEFPG L+ TP +A     Y D+KFNVD THLIQLG TL D  G I+ T+E N SDF+  K      SI  LK +GL+ DKI ++GI    F   F + L +    + WV F G YD AYLVK  T    LP T E F   V  L  + VFD+K +A  C             A +L +KR G AHHAGSDS LTA VF ++
Sbjct:    4 VWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLIQLGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFFRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDVKKIAESC-SGLSSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 229          
BLAST of CF509201 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.182e-35
Identity = 93/245 (37.96%), Postives = 126/245 (51.43%), Query Frame = 1
Query:   34 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTP----RNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKIS---------YTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLEGLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFF-QSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRH-GGAHHAGSDSLLTAAVFAEMK 723
            I +VW  N E     +  ++  +  +S+DTEFPG +        R       YN LK NVD   LIQ+G+TLSD +G +          Y +EFNF DFD+++D HA DSI+LL+  G+DF++ R++G+    FA   +       E++ WVTFH  YD  YLVKI T   LP     F G+   FF   V+D+K +  +C             AR L V R  G  H AGSDSLLT   F  M+
Sbjct:   14 IRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFC--EQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQAFQRMR 256          
BLAST of CF509201 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.359e-34
Identity = 90/239 (37.66%), Postives = 125/239 (52.30%), Query Frame = 1
Query:   43 VWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKI---------SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLEGLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGV-AALFFQSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRH-GGAHHAGSDSLLTAAVFAEMK 723
            VW EN E     + ++++ +  +S+DTEFPG + ++  R     + Y  LK NVD   LIQ+G+TLSD  G +          + +EFNF DFD+ +D HA DSI+LL+  G+DF++  +DG+    FA   +       E + WVTFH  YD  YL+KI T   LP     F  V   LF + V+D+K +  +C             AR L V R  G  H AGSDSLLT   F  M+
Sbjct:   22 VWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMKFC--ERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQRMR 258          
BLAST of CF509201 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.359e-34
Identity = 89/247 (36.03%), Postives = 133/247 (53.85%), Query Frame = 1
Query:   31 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPG--------FLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKISYT--------FEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLEGLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMK 723
            +I  VW +N E  M  + ++++ F  +++DTEFPG        F  NT  +      Y  LK NV+   +IQLG+T SD +G +           ++FNF +FDL+ D++A DSI+LL+ SG+DF K  + GI    FA   +       EN+ WVTFH  YD  YL+K+ T   LP T   F  + +++F  V+DIK +  +C             A +L+V+R G  H AGSDSLLT+  F +++
Sbjct:   11 QIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYH------YETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMISVYFPRVYDIKHLMKFC---NSLHGGLNKLAELLDVERVGICHQAGSDSLLTSCTFRKLQ 248          
BLAST of CF509201 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.144e-32
Identity = 86/240 (35.83%), Postives = 127/240 (52.92%), Query Frame = 1
Query:   31 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRN--APAVESYNDLKFNVDCTHLIQLGITLSDNEGKISYT-------FEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLEGLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMK 723
            +I  VW +N +  M  +  +++ F  +++DTEFPG +        + A   Y  LK NV+   +IQLG+T S+ +G +          ++FNF +FDL  D+ A DSI+LLK SG+D  K   DGI    FA   +       EN+ WVTFH  YD  YL+K+ T   LP +   F  +  ++F +V+DIK +  +C             A +L V+R G  H AGSDSLLT+  F ++K
Sbjct:   11 QIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLINVYFPTVYDIKHLMKFC---NSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLK 247          
BLAST of CF509201 vs. ExPASy Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.144e-32
Identity = 83/229 (36.24%), Postives = 127/229 (55.46%), Query Frame = 1
Query:   43 VWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPR--CVFAPRFLEGLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMK 723
            VW  N +  M  + + L  F +++ DTE+PG +  T  ++ + E Y  +K NV+ T LIQ G TL + +G+I   +E NFS+F    D     SI+ L+  GLD  KIR +G+      F P+ +  + + ++++++VTF G YD AY + I  +  LP T   F+      F  V+D KV+AG+C             A++L + R G AHHAGSDSL+TA VF ++K
Sbjct:   12 VWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVENTKLIQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGYGFFPKLMT-VFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQVYDTKVMAGFC-EGLGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLK 238          
BLAST of CF509201 vs. ExPASy Swiss-Prot
Match: CNOT7_XENLA (CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.106e-32
Identity = 83/236 (35.17%), Postives = 128/236 (54.24%), Query Frame = 1
Query:   31 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNT--PRNAPAVESYNDLKFNVDCTHLIQLGITLSDNEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLEGLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMK 723
            +I  VW  N +  M+ + +++  +N +++DTEFPG +        + A   Y  L+ NVD   +IQLG+T  + +G+    + T++FNF  F+L +D++A DSI+LL  SG+ F K  ++GI    FA  F+       E +KW++FH  YD  YL+KI TN  LP   + F  +  LFF  ++D+K +   C             A  L ++R G  H AGSDSLLT   F +M+
Sbjct:   11 RICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVEQDFFEILRLFFPVIYDVKYLMKSC---KNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMR 242          
The following BLAST results are available for this feature:
BLAST of CF509201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1H_ARATH4.839e-4144.70Putative CCR4-associated factor 1 homolog 8 OS=Ara... [more]
CAF1E_ARATH1.557e-3944.30Probable CCR4-associated factor 1 homolog 5 OS=Ara... [more]
CAF1C_ARATH1.457e-3744.30Putative CCR4-associated factor 1 homolog 3 OS=Ara... [more]
CAF1D_ARATH4.240e-3744.30Putative CCR4-associated factor 1 homolog 4 OS=Ara... [more]
CAF1K_ARATH5.182e-3537.96Probable CCR4-associated factor 1 homolog 11 OS=Ar... [more]
CAF1I_ARATH3.359e-3437.66Probable CCR4-associated factor 1 homolog 9 OS=Ara... [more]
CAF1G_ARATH3.359e-3436.03Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1F_ARATH3.144e-3235.83Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1A_ARATH3.144e-3236.24Probable CCR4-associated factor 1 homolog 1 OS=Ara... [more]
CNOT7_XENLA4.106e-3235.17CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_124000-706 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-75_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509201 ID=CF509201; Name=CF509201; organism=Citrus sinensis; type=EST; length=725bp
TCCACTTCTTTAGCCATGGCCGTAGTGAGCAAGATTCTTAATGTTTGGTG
TGAAAATTTCGAAATCGTGATGCGCTTTCTTGACAAGCTTTTAAATTGTT
TCAACGTGCTATCCATCGACACCGAGTTCCCGGGCTTCCTCCGCAACACC
CCCAGAAACGCACCGGCCGTTGAGTCTTACAATGATCTCAAGTTCAACGT
TGACTGCACCCACCTCATTCAACTTGGCATTACTCTCTCCGACAACGAGG
GCAAGATCAGCTATACTTTTGAATTCAATTTCTCTGACTTTGATCTCAAG
AAAGACCTTCACGCTGGTGATTCTATTCAGCTTTTGAAGGATAGCGGCTT
GGATTTTGACAAGATTCGGAAGGATGGGATTCCCAGGTGTGTTTTTGCTC
CAAGATTCTTGGAGGGTCTGTCCAAACACAGAGAGAATCTCAAGTGGGTC
ACTTTCCATGGTTTGTATGATGTAGCTTACTTGGTTAAAATCTTTACCAA
CGACGCATTGCCGCCGACAGCCGAAGCCTTTTCTGGGGTTGCTGCTCTGT
TTTTCCAGAGTGTTTTTGATATTAAAGTTGTCGCGGGATATTGTCAAGGA
TTACAGGGCCTGAAGCTGGGGTTATCAAAGCTTGCTAGGATTTTGAATGT
TAAGAGACACGGAGGCGCGCACCATGCCGGGTCCGACAGCTTGCTCACGG
CTGCTGTGTTTGCAGAGATGAAAAC
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