CF509243

Overview
NameCF509243
Unique NameCF509243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF509243 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 8.497e-64
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:  346 KGRMC*INFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQ 597
            +G+    NFWGM  TTDKLRSLV+KW +LIEA+VDVKTTDNFTLR+FCIGFTK+  NQVKRTCYAQ+SQI+QIRRKMREIMV Q
Sbjct:   92 QGKNVLTNFWGMDVTTDKLRSLVKKWQSLIEAHVDVKTTDNFTLRMFCIGFTKKRANQVKRTCYAQSSQIKQIRRKMREIMVTQ 175

HSP 2 Score: 127.487 bits (319), Expect = 8.497e-64
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 3 
Query:  153 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVL 362
            DWYDIKAPS F  RNVGKTLVTRTQGTKIASEGLKHRVFEVSL DL N+E+H+YRKIRLRAEDVQGKNVL
Sbjct:   28 DWYDIKAPSLFITRNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQNDEDHSYRKIRLRAEDVQGKNVL 97
[Close]
BLAST of CF509243 vs. ExPASy Swiss-Prot
Match: RS3A_SUBDO (40S ribosomal protein S3a OS=Suberites domuncula PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.357e-50
Identity = 53/84 (63.10%), Postives = 67/84 (79.76%), Query Frame = 1 
Query:  346 KGRMC*INFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQ 597
            +G+    NF GM+ TTDKLR+LV+KW TLIEA VDVKTTD + LRLFCIGFTKR PNQ+K+T YA++SQ R IR+KM ++M  +
Sbjct:   91 QGKNVLTNFHGMTMTTDKLRALVKKWQTLIEANVDVKTTDGYLLRLFCIGFTKRQPNQIKKTSYAKSSQCRSIRKKMVDVMTRE 174

HSP 2 Score: 105.531 bits (262), Expect = 7.357e-50
Identity = 51/70 (72.86%), Postives = 61/70 (87.14%), Query Frame = 3 
Query:  153 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVL 362
            DWYD+KAPS F VRN+GKTLVTRTQG K+AS+GLK RVFEVSL DL N+E+ ++RK RL +ED+QGKNVL
Sbjct:   28 DWYDVKAPSMFAVRNIGKTLVTRTQGKKLASDGLKGRVFEVSLADLQNDEQ-SFRKFRLISEDIQGKNVL 96
[Close]
BLAST of CF509243 vs. ExPASy Swiss-Prot
Match: RS3A_OPHHA (40S ribosomal protein S3a OS=Ophiophagus hannah GN=RPS3A PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 7.983e-49
Identity = 49/84 (58.33%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:  346 KGRMC*INFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQ 597
            +G+ C INF GM  T DK+ S+V+KW T+IEA++DVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +
Sbjct:   92 QGKNCLINFHGMDLTRDKMCSMVKKWQTMIEAHIDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMVEIMTRE 175

HSP 2 Score: 103.99 bits (258), Expect = 7.983e-49
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 3 
Query:  153 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVL 362
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN L
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCL 97
[Close]
BLAST of CF509243 vs. ExPASy Swiss-Prot
Match: RS3A_EIMTE (40S ribosomal protein S3a OS=Eimeria tenella PE=2 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.356e-48
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:  346 KGRMC*INFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQ 597
            +G+ C  NF GM  T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +
Sbjct:   92 QGKNCLTNFHGMDLTRDKMFSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTGE 175

HSP 2 Score: 103.99 bits (258), Expect = 1.356e-48
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 3 
Query:  153 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVL 362
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN L
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCL 97
[Close]
BLAST of CF509243 vs. ExPASy Swiss-Prot
Match: RS3A_TAEGU (40S ribosomal protein S3a OS=Taeniopygia guttata GN=RPS3A PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.768e-48
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:  346 KGRMC*INFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQ 597
            +G+ C  NF GM  T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +
Sbjct:   92 QGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTRE 175

HSP 2 Score: 103.99 bits (258), Expect = 1.768e-48
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 3 
Query:  153 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVL 362
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN L
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCL 97
[Close]
BLAST of CF509243 vs. ExPASy Swiss-Prot
Match: RS3A_RAT (40S ribosomal protein S3a OS=Rattus norvegicus GN=Rps3a PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.768e-48
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:  346 KGRMC*INFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQ 597
            +G+ C  NF GM  T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +
Sbjct:   92 QGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTRE 175

HSP 2 Score: 103.99 bits (258), Expect = 1.768e-48
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 3 
Query:  153 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVL 362
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN L
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCL 97
[Close]
BLAST of CF509243 vs. ExPASy Swiss-Prot
Match: RS3A_MOUSE (40S ribosomal protein S3a OS=Mus musculus GN=Rps3a PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.768e-48
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:  346 KGRMC*INFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQ 597
            +G+ C  NF GM  T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +
Sbjct:   92 QGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTRE 175

HSP 2 Score: 103.99 bits (258), Expect = 1.768e-48
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 3 
Query:  153 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVL 362
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN L
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCL 97
[Close]
BLAST of CF509243 vs. ExPASy Swiss-Prot
Match: RS3A_HUMAN (40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.768e-48
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:  346 KGRMC*INFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQ 597
            +G+ C  NF GM  T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +
Sbjct:   92 QGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTRE 175

HSP 2 Score: 103.99 bits (258), Expect = 1.768e-48
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 3 
Query:  153 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVL 362
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN L
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCL 97
[Close]
BLAST of CF509243 vs. ExPASy Swiss-Prot
Match: RS3A_GECJA (40S ribosomal protein S3a OS=Gecko japonicus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.768e-48
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:  346 KGRMC*INFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQ 597
            +G+ C  NF GM  T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +
Sbjct:   92 QGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTRE 175

HSP 2 Score: 103.99 bits (258), Expect = 1.768e-48
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 3 
Query:  153 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVL 362
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN L
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCL 97
[Close]
BLAST of CF509243 vs. ExPASy Swiss-Prot
Match: RS3A_BOVIN (40S ribosomal protein S3a OS=Bos taurus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.768e-48
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:  346 KGRMC*INFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQ 597
            +G+ C  NF GM  T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +
Sbjct:   92 QGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTRE 175

HSP 2 Score: 103.99 bits (258), Expect = 1.768e-48
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 3 
Query:  153 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVL 362
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN L
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCL 97
The following BLAST results are available for this feature:
BLAST of CF509243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
RS3A_HELAN8.497e-6477.3840S ribosomal protein S3a OS=Helianthus annuus GN=... [more]
RS3A_SUBDO7.357e-5063.1040S ribosomal protein S3a OS=Suberites domuncula P... [more]
RS3A_OPHHA7.983e-4958.3340S ribosomal protein S3a OS=Ophiophagus hannah GN... [more]
RS3A_EIMTE1.356e-4858.3340S ribosomal protein S3a OS=Eimeria tenella PE=2 ... [more]
RS3A_TAEGU1.768e-4858.3340S ribosomal protein S3a OS=Taeniopygia guttata G... [more]
RS3A_RAT1.768e-4858.3340S ribosomal protein S3a OS=Rattus norvegicus GN=... [more]
RS3A_MOUSE1.768e-4858.3340S ribosomal protein S3a OS=Mus musculus GN=Rps3a... [more]
RS3A_HUMAN1.768e-4858.3340S ribosomal protein S3a OS=Homo sapiens GN=RPS3A... [more]
RS3A_GECJA1.768e-4858.3340S ribosomal protein S3a OS=Gecko japonicus GN=RP... [more]
RS3A_BOVIN1.768e-4858.3340S ribosomal protein S3a OS=Bos taurus GN=RPS3A P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_124000-750 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-76_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509243 ID=CF509243; Name=CF509243; organism=Citrus sinensis; type=EST; length=598bp
CTTCACTCAAAACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTCTCT
TGAGCAGCAGCCTGCACAAACATGGCCGTCGGGAAGAACAAGAGGATTTC
AAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGA
AGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATGTT
GGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATTGCATCAGAAGG
ACTCAAACACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAACGAAG
AAGAGCACGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCCAAGGG
AAGAATGTGTTGAATTAACTTCTGGGGCATGAGTTTCACTACAGACAAGC
TGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTATGTGGAT
GTCAAGACCACTGATAACTTCACATTGAGATTGTTCTGCATTGGATTCAC
CAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTATGCACAGACCAGCC
AGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCAGG
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