CF509314

Overview
NameCF509314
Unique NameCF509314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF509314 vs. ExPASy Swiss-Prot
Match: B3GTB_ARATH (Probable beta-1,3-galactosyltransferase 11 OS=Arabidopsis thaliana GN=B3GALT11 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.280e-35
Identity = 83/138 (60.14%), Postives = 99/138 (71.74%), Query Frame = 2 
Query:  218 MQSRGSSNKLSSMIARTRISSLLLSMFATFASIYVAGRLWQDAQTRVRLIKELDRITGYGKSAISVDDTLKIIACREQRKKLLELEMQLAAAGQEGFXXXXXXXXXXXXXXXRPLVVIGILTRVGRKIIEMQFVKRGW 631
            M  +GSS +LSS    +RIS+LLL MFATFAS YVAGRLWQ++QTRV LI ELDR+TG GKSAISVDDTLKIIACREQ+K L  LEM+L++A QEGF               RPLVVIGI+T +G K  +   V++ W
Sbjct:    1 MARKGSSIRLSS----SRISTLLLFMFATFASFYVAGRLWQESQTRVHLINELDRVTGQGKSAISVDDTLKIIACREQKKTLAALEMELSSARQEGFVSKSPKLADGTETKKRPLVVIGIMTSLGNK-KKRDAVRQAW 133
The following BLAST results are available for this feature:
BLAST of CF509314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
B3GTB_ARATH4.280e-3560.14Probable beta-1,3-galactosyltransferase 11 OS=Arab... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_124000-821 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-76_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509314 ID=CF509314; Name=CF509314; organism=Citrus sinensis; type=EST; length=651bp
ACACAACACAACAAAGCTCTCACTTTTTATCAGTTATCAAAATCCAACAT
AAACCTCCATCAAATCAAACAATAGATCTCATTTACAAAATCTTTACAGA
AACCCTCTTAAAACGATCGCCCAAAAAAGTTAAAAATCAACTCTTTTTTA
ATCCATCGATACGGAAAAGAGAAAGAAAAGGGCACAAGATTTAAAGAGAG
ATAAAAAGAAAAAAAAGATGCAAAGCAGGGGATCGAGTAACAAGCTTTCC
AGCATGATTGCTAGGACCCGGATATCATCTCTATTGCTTTCAATGTTTGC
TACTTTTGCTTCCATTTACGTAGCTGGCAGATTGTGGCAGGATGCTCAGA
CCAGAGTTCGTTTGATTAAAGAGCTGGATAGAATCACTGGTTATGGCAAA
TCTGCTATATCAGTGGATGATACTCTGAAAATCATAGCATGCAGAGAGCA
ACGGAAGAAGTTATTAGAGCTTGAGATGCAGTTGGCTGCGGCTGGACAGG
AAGGTTTTAAATCAAAGGGCTCAACAGATACGGATGACAAGGATCCAAAG
AAAAGGCCACTAGTTGTGATAGGTATACTAACGAGGGTTGGCCGAAAAAT
AATAGAGATGCAATTCGTAAAGCGTGGATGGGAACTGGTGCAGCTTTGAA
A
back to top