CF509445

Overview
NameCF509445
Unique NameCF509445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF509445 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.429e-28
Identity = 64/155 (41.29%), Postives = 87/155 (56.13%), Query Frame = 3 
Query:    6 GYIQVFLDGGLNQQRMGICDAVAVTKILNATLVIPYLEVNPVWQDSSSFMDIYDVDHFINVLKDDISIVKELPNEFSWSTREYYXXXXXXXXXXXXPVHASANWYLENVLPVLQSYGVAAISPFSHRLTFDNLPMDIQRLRCKANFQALIFVPHI 470
            GY++V  +GGLNQQR  IC+AV   +I+NATLV+P L+ N  W D S F  IYDV+HFI  LK D+ IV ++P+       +              P  A   WYL   L  ++ +    ++PFSHRL  +    + QRLRC+ N+ AL F PHI
Sbjct:   90 GYLRVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPD-----VHKNGKTKKIKAFQIRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHI 239
The following BLAST results are available for this feature:
BLAST of CF509445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1491_ARATH1.429e-2841.29DUF246 domain-containing protein At1g04910 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_124000-952 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-78_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509445 ID=CF509445; Name=CF509445; organism=Citrus sinensis; type=EST; length=472bp
CTCAAGGATACATTCAGGTATTTCTTGATGGAGGGTTAAACCAGCAGAGA
ATGGGGATATGTGATGCAGTTGCTGTTACAAAAATTCTGAATGCAACACT
TGTGATCCCATATCTTGAAGTAAATCCTGTTTGGCAGGATTCAAGTTCCT
TCATGGATATATATGATGTCGATCACTTTATTAATGTATTAAAAGATGAT
ATTTCTATTGTCAAAGAACTTCCTAATGAGTTTTCTTGGAGCACAAGGGA
GTATTATGCCACTGCTATTCGTGCCACCAGAATCAAGACAGCACCAGTTC
ATGCTTCAGCTAACTGGTACCTAGAGAATGTCTTGCCTGTACTCCAGAGT
TATGGGGTTGCTGCAATTTCCCCATTCTCTCACCGTCTGACGTTTGACAA
CTTGCCGATGGACATTCAACGATTACGTTGTAAAGCAAACTTCCAAGCAT
TGATTTTTGTACCTCATATCAG
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