CF509452

Overview
NameCF509452
Unique NameCF509452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length122
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509452 vs. ExPASy Swiss-Prot
Match: AROA_ARATH (3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Arabidopsis thaliana GN=At2g45300 PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 3
Query:    3 VEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASY 107
            VEHSDSWDRFF++GGQKYKSPGNA+VEGDASSASY
Sbjct:  300 VEHSDSWDRFFVKGGQKYKSPGNAYVEGDASSASY 334          
BLAST of CF509452 vs. ExPASy Swiss-Prot
Match: AROA_BRANA (3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.161e-13
Identity = 31/34 (91.18%), Postives = 34/34 (100.00%), Query Frame = 3
Query:    6 EHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASY 107
            EHSDSWDRFF++GGQKYKSPGNA+VEGDASSASY
Sbjct:  297 EHSDSWDRFFVKGGQKYKSPGNAYVEGDASSASY 330          
BLAST of CF509452 vs. ExPASy Swiss-Prot
Match: AROA_PETHY (3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Petunia hybrida PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.341e-12
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 3
Query:    3 VEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASY 107
            VEHS SWDRFF++GGQKYKSPG AFVEGDASSASY
Sbjct:  296 VEHSSSWDRFFVRGGQKYKSPGKAFVEGDASSASY 330          
BLAST of CF509452 vs. ExPASy Swiss-Prot
Match: AROA_SOLLC (3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.381e-11
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 3
Query:    3 VEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASY 107
            VEHS  WDRF ++GGQKYKSPG AFVEGDASSASY
Sbjct:  300 VEHSSGWDRFLVKGGQKYKSPGKAFVEGDASSASY 334          
BLAST of CF509452 vs. ExPASy Swiss-Prot
Match: AROA2_TOBAC (3-phosphoshikimate 1-carboxyvinyltransferase 2 (Fragment) OS=Nicotiana tabacum GN=EPSPS-2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.381e-11
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 3
Query:    3 VEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASY 107
            VEHS SWDRF ++GGQKYKSPG A+VEGDASSASY
Sbjct:  118 VEHSSSWDRFVVRGGQKYKSPGKAYVEGDASSASY 152          
The following BLAST results are available for this feature:
BLAST of CF509452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
AROA_ARATH2.117e-1391.433-phosphoshikimate 1-carboxyvinyltransferase, chlo... [more]
AROA_BRANA6.161e-1391.183-phosphoshikimate 1-carboxyvinyltransferase, chlo... [more]
AROA_PETHY2.341e-1288.573-phosphoshikimate 1-carboxyvinyltransferase, chlo... [more]
AROA_SOLLC3.381e-1182.863-phosphoshikimate 1-carboxyvinyltransferase, chlo... [more]
AROA2_TOBAC3.381e-1182.863-phosphoshikimate 1-carboxyvinyltransferase 2 (Fr... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_124000-959 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-78_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509452 ID=CF509452; Name=CF509452; organism=Citrus sinensis; type=EST; length=122bp
TTGTAGAGCACAGTGATAGCTGGGATCGGTTCTTCATCCAGGGGGGTCAA
AAGTACAAGTCTCCTGGAAATGCTTTTGTAGAAGGTGATGCTTCAAGTGC
TAGTTACCTTTGTAGCTGGTGC
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