CF509468

Overview
NameCF509468
Unique NameCF509468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length261
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509468 vs. ExPASy Swiss-Prot
Match: FABD_MOUSE (Malonyl CoA-acyl carrier protein transacylase, mitochondrial OS=Mus musculus GN=Mcat PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.208e-16
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   37 NAFLFPGQGAQAVGMGKEAHSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELL 255
            +  LFPGQG QAVGMG     +P   +LY+ A+ +LG+DLLE+C  GP+E LD T+  QPA++V SLAAVE L
Sbjct:   61 SVLLFPGQGCQAVGMGSGLLHLPRVRQLYEAAHRVLGYDLLELCLRGPQEDLDRTVHCQPAVFVASLAAVEKL 133          
BLAST of CF509468 vs. ExPASy Swiss-Prot
Match: FABD_HUMAN (Malonyl CoA-acyl carrier protein transacylase, mitochondrial OS=Homo sapiens GN=MCAT PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.336e-15
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   37 NAFLFPGQGAQAVGMGKEAHSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELL 255
            +  LFPGQG+Q VGMG+   + P   ELY  A  +LG+DLLE+  +GP+E LD T+  QPAI+V SLAAVE L
Sbjct:   63 SVLLFPGQGSQVVGMGRGLLNYPRVRELYAAARRVLGYDLLELSLHGPQETLDRTVHCQPAIFVASLAAVEKL 135          
BLAST of CF509468 vs. ExPASy Swiss-Prot
Match: FABD_DROME (Probable malonyl CoA-acyl carrier protein transacylase, mitochondrial OS=Drosophila melanogaster GN=beg PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.278e-15
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   22 DYKPTNAFLFPGQGAQAVGMGKEAHSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELLR 258
            D K T+  LFPGQG Q VGM K+    P A  +++ AN++L +DLL+IC  GP+EKL+ T  +Q A+ V+SLAA+E LR
Sbjct:   63 DPKETSVMLFPGQGTQYVGMAKDLLRFPGARRIFELANEVLKYDLLKICLEGPREKLNRTEHAQLAVMVSSLAALEQLR 141          
The following BLAST results are available for this feature:
BLAST of CF509468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FABD_MOUSE1.208e-1654.79Malonyl CoA-acyl carrier protein transacylase, mit... [more]
FABD_HUMAN1.336e-1554.79Malonyl CoA-acyl carrier protein transacylase, mit... [more]
FABD_DROME2.278e-1550.63Probable malonyl CoA-acyl carrier protein transacy... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_124000-975 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-78_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509468 ID=CF509468; Name=CF509468; organism=Citrus sinensis; type=EST; length=261bp
GTTGATGATGCCCTGTTTGCGGATTACAAGCCCACCAATGCTTTCTTGTT
TCCTGGTCAGGGTGCACAAGCAGTTGGAATGGGGAAGGAGGCTCATAGCG
TACCAGCTGCCGCAGAGCTATACAAGAAAGCAAATGATATATTAGGTTTT
GATTTGCTAGAAATTTGCACCAATGGACCAAAAGAGAAGCTAGATTCAAC
TATTATCAGCCAGCCTGCCATCTATGTCACAAGTTTAGCGGCAGTTGAAC
TACTCCGAGCT
back to top