CF509474

Overview
NameCF509474
Unique NameCF509474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length402
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509474 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.839e-29
Identity = 57/100 (57.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:  105 CGSGV-VCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEY 401
            CG+    CG       +  G++G++I+R MF D+L +RN+  CP +GFYTYDAFI AA+AFPGFG +G+ T RKREIAAF AQT HETTGGW  AP G Y
Sbjct:   44 CGNTADYCGSGCQSQCSSTGDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPY 143          
BLAST of CF509474 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 8.667e-28
Identity = 58/92 (63.04%), Postives = 66/92 (71.74%), Query Frame = 3
Query:  126 GERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEY 401
            G  D G   D G L  II +  F+ LL +RNDARCPA GFYTY+AFI AA+ FP FGN+G++ MRKREIAAF  QT HETTGGW DAP G Y
Sbjct:   76 GGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPY 167          
BLAST of CF509474 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.478e-27
Identity = 60/101 (59.41%), Postives = 71/101 (70.30%), Query Frame = 3
Query:  105 CGSGVVCGERDTGHGTD--GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEY 401
            CG G  C  +  G  T   GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FPGFG SG+ T RKREIAAFFAQT HETTGGW  AP G Y
Sbjct:   54 CGPGN-CQSQCPGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPY 153          
BLAST of CF509474 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.478e-27
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 3
Query:  159 GELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEY 401
            G+L  IISR  F+D+L +RND  CPARGFYTYDAFI AA++FPGFG +G+   RK+EIAAFF QT HETTGGW  AP G Y
Sbjct:   69 GDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPY 149          
BLAST of CF509474 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 2.522e-27
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 3
Query:  156 GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEY 401
            GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FPGFG SG+ T RKREIAAFFAQT HETTGGW  AP G Y
Sbjct:   77 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPY 158          
BLAST of CF509474 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 9.582e-27
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 3
Query:  159 GELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEY 401
            G+L  IIS   F+D+L +RNDA CPARGFYTY+AFI AA++FPGFG +G+   RK+E+AAFF QT HETTGGW  AP G Y
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPY 164          
BLAST of CF509474 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.788e-26
Identity = 55/98 (56.12%), Postives = 66/98 (67.35%), Query Frame = 3
Query:  108 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEY 401
            G G   G    G G  GG +  ++S+E+FE LL +RNDA CPARGFYTYDA + AA AFP F  +G++  RKRE+AAF  QT HETTGGW  AP G Y
Sbjct:   67 GGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPY 164          
BLAST of CF509474 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.641e-26
Identity = 55/99 (55.56%), Postives = 66/99 (66.67%), Query Frame = 3
Query:  105 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEY 401
            CG G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AA+A+P FGN+G+   RKREIAAF  QT HETTGGW  AP G Y
Sbjct:   58 CGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPY 154          
BLAST of CF509474 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.211e-26
Identity = 57/102 (55.88%), Postives = 69/102 (67.65%), Query Frame = 3
Query:  105 CGSGVVCGERDTGHGTD---GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEY 401
            CGSG  C  +  G G     GG+LG  IS  MF+ +L +RN+  C  + FY+Y+AFI AA++FPGFG SG+   RKREIAAFFAQT HETTGGW  AP G Y
Sbjct:   57 CGSGN-CQSQCPGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPY 157          
BLAST of CF509474 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.059e-25
Identity = 56/104 (53.85%), Postives = 67/104 (64.42%), Query Frame = 3
Query:  105 CGS-----GVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEY 401
            CGS     G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AA+A+P FGN+G+   RKREIAAF  QT HETTGGW  AP G Y
Sbjct:   50 CGSTTDYCGKDCQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPY 153          
The following BLAST results are available for this feature:
BLAST of CF509474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CHIB_VITVI7.839e-2957.00Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI6_POPTR8.667e-2863.04Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI2_TOBAC1.478e-2759.41Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI2_BRANA1.478e-2766.67Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI1_TOBAC2.522e-2765.85Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIB_ARATH9.582e-2764.20Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI9_ORYSJ2.788e-2656.12Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PHAVU3.641e-2655.56Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIT_SOLTU6.211e-2655.88Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI5_PHAVU1.059e-2553.85Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_124000-981 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-78_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509474 ID=CF509474; Name=CF509474; organism=Citrus sinensis; type=EST; length=402bp
GGATAATTGATATCATAACTCTTGCTTTCAAAATGAGGCTCATTGGGTCC
TTACTAATTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGTTCAGCACA
GAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACTGGCCACGGGA
CGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGAC
TTGCTTCCGTATAGAAATGATGCCCGATGCCCTGCCAGAGGCTTCTACAC
TTATGATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACT
CTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAA
ACTGGCCATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATA
TG
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