CF509491

Overview
NameCF509491
Unique NameCF509491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509491 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.595e-53
Identity = 99/120 (82.50%), Postives = 104/120 (86.67%), Query Frame = 3
Query:    3 RVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALK 362
            RVVVDARHHMLGRLAS+ AKELLNGQKVV+VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT            YEGVP PYDK KRMVIPDALK
Sbjct:   11 RVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALK 130          
BLAST of CF509491 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.303e-52
Identity = 97/120 (80.83%), Postives = 103/120 (85.83%), Query Frame = 3
Query:    3 RVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALK 362
            RVVVDARHHM GRLAS++AKELLNGQ VVVVRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT            +EGVP PYDK KRMVIPDALK
Sbjct:   11 RVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALK 130          
BLAST of CF509491 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.303e-52
Identity = 96/120 (80.00%), Postives = 104/120 (86.67%), Query Frame = 3
Query:    3 RVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALK 362
            RVVVDARHHMLGRLASV+AK+LLNGQ +VVVRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT            +EGVP PYDK KRMV+PDALK
Sbjct:   11 RVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALK 130          
BLAST of CF509491 vs. ExPASy Swiss-Prot
Match: RL13A_PICMA (60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.493e-51
Identity = 96/119 (80.67%), Postives = 105/119 (88.24%), Query Frame = 3
Query:    6 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALK 362
            VVVDARHHMLGRLAS+LAKELL+GQ+VVVVRCEEIC+SGGLVRQKMKY+RFLRKRMNTKPSHGPIHFRAP++ILWRTIRGMIPHKT            +EGVP PYD+ KRMVIPDALK
Sbjct:   12 VVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRKKRMVIPDALK 130          
BLAST of CF509491 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 2.546e-51
Identity = 96/120 (80.00%), Postives = 102/120 (85.00%), Query Frame = 3
Query:    3 RVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALK 362
            RVVVD RHHMLGRLAS  AKELLNGQ+VVVVRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT            +EG+P PYDK KRMVIPDALK
Sbjct:   11 RVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALK 130          
BLAST of CF509491 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.017e-48
Identity = 92/120 (76.67%), Postives = 102/120 (85.00%), Query Frame = 3
Query:    3 RVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALK 362
            RVVVDARHHMLGRLAS++AKELLNGQKVV+VR EEICISGGLVRQKMKY+RFLRKRMNTKPSHGPIH  AP+KI WRT+RGMIPHKT            YEG+P P+DK KR+V+PDALK
Sbjct:   11 RVVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALK 129          
BLAST of CF509491 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.235e-39
Identity = 79/119 (66.39%), Postives = 89/119 (74.79%), Query Frame = 3
Query:    6 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALK 362
            VVVD R H+LGRLA+ LAKELLNGQ+VV VR EEI ISG L R K+K+  FL+KRMNT P  GP HFR+PA+ILWRTIRGMIPHKT            +EGVP PYDK KRMVIP AL+
Sbjct:    6 VVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALR 124          
BLAST of CF509491 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 1.227e-37
Identity = 71/119 (59.66%), Postives = 90/119 (75.63%), Query Frame = 3
Query:    6 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALK 362
            +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALK
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALK 125          
BLAST of CF509491 vs. ExPASy Swiss-Prot
Match: RL13A_PIG (60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 1.227e-37
Identity = 71/119 (59.66%), Postives = 90/119 (75.63%), Query Frame = 3
Query:    6 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALK 362
            +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALK
Sbjct:    3 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALK 121          
BLAST of CF509491 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 1.227e-37
Identity = 71/119 (59.66%), Postives = 90/119 (75.63%), Query Frame = 3
Query:    6 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALK 362
            +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALK
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALK 125          
The following BLAST results are available for this feature:
BLAST of CF509491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
R13A4_ARATH1.595e-5382.5060S ribosomal protein L13a-4 OS=Arabidopsis thalia... [more]
R13A2_ARATH2.303e-5280.8360S ribosomal protein L13a-2 OS=Arabidopsis thalia... [more]
R13A1_ARATH2.303e-5280.0060S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]
RL13A_PICMA1.493e-5180.6760S ribosomal protein L13a OS=Picea mariana GN=RPL... [more]
R13A3_ARATH2.546e-5180.0060S ribosomal protein L13a-3 OS=Arabidopsis thalia... [more]
RL13A_LUPLU2.017e-4876.6760S ribosomal protein L13a OS=Lupinus luteus GN=RP... [more]
RL13A_CYAPA2.235e-3966.3960S ribosomal protein L13a OS=Cyanophora paradoxa ... [more]
RL13A_PONAB1.227e-3759.6660S ribosomal protein L13a OS=Pongo abelii GN=RPL1... [more]
RL13A_PIG1.227e-3759.6660S ribosomal protein L13a (Fragment) OS=Sus scrof... [more]
RL13A_MACFA1.227e-3759.6660S ribosomal protein L13a OS=Macaca fascicularis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_124000-998 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-78_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509491 ID=CF509491; Name=CF509491; organism=Citrus sinensis; type=EST; length=362bp
AAAGAGTGGTGGTGGACGCCAGGCACCACATGCTCGGCCGTCTTGCCTCC
GTTTTGGCCAAGGAGCTCTTGAACGGCCAGAAGGTCGTCGTCGTCCGGTG
CGAGGAGATTTGTATCTCAGGTGGGCTTGTTAGGCAGAAGATGAAGTACA
TGAGGTTCTTGAGAAAGAGGATGAACACTAAGCCTTCTCATGGTCCCATC
CATTTTCGAGCTCCCGCTAAGATCCTTTGGCGTACCATCCGTGGGATGAT
TCCCCACAAAACTAAGCGTGGAGCTGCAGCCCTTGCTCGTTTGAAGGCTT
ATGAAGGAGTTCCTGCTCCATATGACAAGACAAAGAGGATGGTCATTCCT
GATGCTCTCAAG
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