CF509574

Overview
NameCF509574
Unique NameCF509574
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509574 vs. ExPASy Swiss-Prot
Match: AIG1_ARATH (Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.194e-26
Identity = 57/102 (55.88%), Postives = 74/102 (72.55%), Query Frame = 3
Query:   75 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLV 380
            D++  + P   E  +VLVGRTGNGKSATGNSI+  + FKS+  SSGVT  C   + V  +G ++NVIDTPGLFD S  +EF+GKEIVKC+ +A  G+HAVL+
Sbjct:   32 DEFSASQPHPVEN-IVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLL 132          
BLAST of CF509574 vs. ExPASy Swiss-Prot
Match: P2A03_ARATH (Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.331e-23
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 3
Query:  111 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLV 380
            + +VLVGRTGNGKS+TGN++LG + FKS+  + GVT  CEM R  ++DG ++NVIDTPGL D     + +  EI+ C+ MA++GIHAVL+
Sbjct:    6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGLCDSFVPGDDISNEIINCLTMAEEGIHAVLL 95          
BLAST of CF509574 vs. ExPASy Swiss-Prot
Match: GIMA4_HUMAN (GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.091e-17
Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = 3
Query:   96 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLV 380
            P N +  +VLVG+TG GKSATGNSILGR+ F S  ++  +T  CE + +  K+ ++V V+DTPG+FD    +    KEI++CI +   G HA+L+
Sbjct:   26 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLL 119          
BLAST of CF509574 vs. ExPASy Swiss-Prot
Match: GIMA4_RAT (GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.881e-15
Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 3
Query:  117 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLV 380
            +VL+G+TG GKS+TGNSILGR+AF S   +  +T  CE +   + DG+ + V+DTPG+FD         KEI +C+ +   G HA+L+
Sbjct:   33 IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCE-KGVSIWDGKELVVVDTPGIFDTEVPDADTQKEITRCVALTSPGPHALLL 119          
BLAST of CF509574 vs. ExPASy Swiss-Prot
Match: GIMA5_HUMAN (GTPase IMAP family member 5 OS=Homo sapiens GN=GIMAP5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.130e-13
Identity = 42/114 (36.84%), Postives = 68/114 (59.65%), Query Frame = 3
Query:   39 GTFYMMGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLV 380
            G +  M     +D+   T P+     ++LVG+TG GKSATGNSILG+  F+S+  +  VT TC++ +T   +G+ V V+DTP +F+  A ++ + K I  C  ++  G H +L+
Sbjct:    7 GKYGTMAEGRSEDNLSATPPA---LRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQV-KTGTWNGRKVLVVDTPSIFESQADTQELYKNIGDCYLLSAPGPHVLLL 116          
BLAST of CF509574 vs. ExPASy Swiss-Prot
Match: GIMA4_MOUSE (GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.633e-13
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = 3
Query:  117 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLV 380
            +VL+G+TG GKS+TGNSILG + F S   +  +T  CE +R    DG+ + V+DTPG+FD         +EI + + +   G HA+L+
Sbjct:   33 IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCE-KRVSTWDGKELVVVDTPGIFDTEVPDADTQREITRYVALTSPGPHALLL 119          
BLAST of CF509574 vs. ExPASy Swiss-Prot
Match: GIMA7_HUMAN (GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.057e-12
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 3
Query:  117 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLV 380
            +VLVG+TG+GKSAT N+ILG   F SR ++  VT  C+      + G+ + V+DTPGLFD     +   KEI +CI  +  G HA+++
Sbjct:   11 IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQ-GRDLLVVDTPGLFDTKESLDTTCKEISRCIISSCPGPHAIVL 97          
BLAST of CF509574 vs. ExPASy Swiss-Prot
Match: GIMA2_HUMAN (GTPase IMAP family member 2 OS=Homo sapiens GN=GIMAP2 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.803e-12
Identity = 36/94 (38.30%), Postives = 58/94 (61.70%), Query Frame = 3
Query:   99 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLV 380
            S  E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +IDTP +F +    E + KE+ +C  ++  G H +L+
Sbjct:   19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLL 111          
BLAST of CF509574 vs. ExPASy Swiss-Prot
Match: GIMA6_MOUSE (GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.246e-12
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 3
Query:  117 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLV 380
            ++LVG+TG+GKSATGNSILGR+AF+S+ S+  VT+T + + T   +G+ + VIDTP +F      E   K+I  C  +A  G HAVL+
Sbjct:  106 LLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQ-KGTREFEGKELEVIDTPDIFSPQNQPEATAKKI--CDLLASPGPHAVLL 190          
BLAST of CF509574 vs. ExPASy Swiss-Prot
Match: GIMA8_HUMAN (GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.948e-12
Identity = 37/91 (40.66%), Postives = 58/91 (63.74%), Query Frame = 3
Query:  108 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLV 380
            E  ++L+G+  +GKSATGN+ILG+  FKS+ S   V   C+ +  VL++ +VV VIDTP LF   A +E   + I  C+ ++   +HA+L+
Sbjct:   10 ELRLLLLGKCRSGKSATGNAILGKHVFKSKFSDQTVIKMCQRESWVLRERKVV-VIDTPDLFSSIACAEDKQRNIQHCLELSAPSLHALLL 99          
The following BLAST results are available for this feature:
BLAST of CF509574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AIG1_ARATH2.194e-2655.88Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 ... [more]
P2A03_ARATH1.331e-2353.33Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabi... [more]
GIMA4_HUMAN1.091e-1745.26GTPase IMAP family member 4 OS=Homo sapiens GN=GIM... [more]
GIMA4_RAT3.881e-1544.32GTPase IMAP family member 4 OS=Rattus norvegicus G... [more]
GIMA5_HUMAN2.130e-1336.84GTPase IMAP family member 5 OS=Homo sapiens GN=GIM... [more]
GIMA4_MOUSE3.633e-1340.91GTPase IMAP family member 4 OS=Mus musculus GN=Gim... [more]
GIMA7_HUMAN1.057e-1243.18GTPase IMAP family member 7 OS=Homo sapiens GN=GIM... [more]
GIMA2_HUMAN1.803e-1238.30GTPase IMAP family member 2 OS=Homo sapiens GN=GIM... [more]
GIMA6_MOUSE5.246e-1247.73GTPase IMAP family member 6 OS=Mus musculus GN=Gim... [more]
GIMA8_HUMAN8.948e-1240.66GTPase IMAP family member 8 OS=Homo sapiens GN=GIM... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-082 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509574 ID=CF509574; Name=CF509574; organism=Citrus sinensis; type=EST; length=380bp
CGCAATCCCTTTTGCTCTCCTGTCTTCGCAAGTAAATTGGAACTTTTTAT
ATGATGGGAGGAAGTGCGATTGATGATGATTGGGAGCTTACTTCTCCATC
TAATGGGGAGCGCACTGTGGTTTTAGTTGGCCGTACTGGCAATGGCAAAA
GTGCGACGGGCAACAGTATTCTTGGAAGAAGAGCCTTCAAGTCAAGGGCT
AGTTCATCTGGTGTTACTAGTACCTGTGAAATGCAGAGAACCGTGCTCAA
AGATGGCCAAGTTGTTAATGTCATTGATACCCCTGGACTTTTTGATTTTT
CCGCTGGCTCTGAGTTTGTTGGCAAGGAAATTGTCAAATGTATCGGTATG
GCCAAGGATGGGATCCATGCAGTCCTTGTA
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