CF509638

Overview
NameCF509638
Unique NameCF509638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length406
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509638 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.561e-40
Identity = 80/132 (60.61%), Postives = 101/132 (76.52%), Query Frame = 2
Query:   17 EQKMAQIGSSLLVPCVQELVKNPALV-VPDRYIRPDQDSPLISDDILIS-QIPVIDMQSLLSKESMDSELAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVV 406
            E K A   SS+LVP VQE+VK   +  VP RY+R DQD   + DD  +  +IP+IDM+ L S  +MDSE+ KLDFACKEWGFFQLVNHG+ ++FL+K+K E++ FFNL MEEKKK+WQRP ++EGFGQAFVV
Sbjct:    2 EAKGAAQWSSILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVV 133          
BLAST of CF509638 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.607e-23
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = 2
Query:   20 QKMAQIGSSLLVPCVQELVKNPALVVPDRYIRPD--QDSPLISDDILISQIPVIDMQSLLSKESMDSELAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFV 403
            + +  +G SL V  VQ L       +P+RY+RP+   D  +  D+ L  +IPVID+  LL ++    ELAK   AC +WGFFQL+NHG+    +EK+K + E FF L  +EK  Y Q P  MEG+GQAFV
Sbjct:    3 KNLTGVGGSLPVENVQVLAGKELKNLPNRYVRPELEHDDVVPIDNSL--EIPVIDLSRLLDQQYACDELAKFHSACLDWGFFQLINHGVREEVIEKMKVDTEDFFRLPFKEKNAYRQLPNGMEGYGQAFV 130          
BLAST of CF509638 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.775e-13
Identity = 42/120 (35.00%), Postives = 69/120 (57.50%), Query Frame = 2
Query:   62 VQELVKNPALVVPDRYIRPDQDSPLISDDILIS------QIPVIDMQSLLSKESMDSE--LAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYW--QRPGDMEGFG 391
            V+ L K+  + +P  YIRP ++   I+D  L        Q+P ID++++ S +    E  + +L  A  +WG   L+NHG+    +E++KK  E FF+LS+EEK+KY   Q  G ++G+G
Sbjct:    7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126          
BLAST of CF509638 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.799e-12
Identity = 37/116 (31.90%), Postives = 70/116 (60.34%), Query Frame = 2
Query:   71 LVKNPALV-----VPDRYIRPDQDSPLISDDILISQIPVIDMQSLLSKESMDSELAKL-DFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAF 400
            L+ NP+++     +P+++I PD + P I+  +L   +P+ID+Q+LLS  S   + ++L   ACK+ GFF +VNHG+S   +    +    FF++ + EK++  ++ G+  G+  +F
Sbjct:   27 LIFNPSMLNLQANIPNQFIWPDDEKPSIN--VLELDVPLIDLQNLLSDPSSTLDASRLISEACKKHGFFLVVNHGISEELISDAHEYTSRFFDMPLSEKQRVLRKSGESVGYASSF 140          
The following BLAST results are available for this feature:
BLAST of CF509638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SRG1_ARATH1.561e-4060.61Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA8.607e-2343.85S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
LDOX_ARATH2.775e-1335.00Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
GAOX1_ARATH1.799e-1231.90Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-146 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-7_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509638 ID=CF509638; Name=CF509638; organism=Citrus sinensis; type=EST; length=406bp
CTTGAAAGGATTTGAGGAACAAAAGATGGCCCAGATTGGAAGTTCTCTCC
TTGTGCCTTGTGTTCAAGAGTTGGTCAAGAATCCGGCGTTAGTTGTCCCC
GACAGATACATACGTCCAGATCAAGATTCACCCCTCATTTCTGATGATAT
TTTGATTTCACAGATACCAGTTATTGACATGCAAAGCTTACTTTCTAAAG
AATCAATGGATTCTGAGTTAGCCAAGCTCGACTTCGCATGCAAAGAATGG
GGTTTTTTCCAGCTGGTAAATCATGGAATGAGCACAGCATTTCTAGAGAA
ATTAAAGAAAGAGGTTGAGGGATTCTTCAATCTCAGCATGGAAGAAAAGA
AAAAATATTGGCAGCGTCCAGGAGATATGGAAGGATTTGGACAAGCCTTT
GTTGTA
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