CF509665

Overview
NameCF509665
Unique NameCF509665
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509665 vs. ExPASy Swiss-Prot
Match: ASHR1_ARATH (Histone-lysine N-methyltransferase ASHR1 OS=Arabidopsis thaliana GN=ASHR1 PE=2 SV=2)

HSP 1 Score: 272.707 bits (696), Expect = 4.417e-87
Identity = 131/190 (68.95%), Postives = 160/190 (84.21%), Query Frame = 3
Query:    3 GSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICDSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLF 572
            GS+CQK +WKLHR EC+ L+RL+KEKRK VTP+I            QN+ V+P TTTDNYSLVEALV+HMS+IDEKQ+LLYAQ+ANLVNLILQ+P + + EIAENFSK +CNAH+ICDSELRP G GL+P++SIINHSC PNAVLVFE ++AVVRA+ ++ K +E+ ISYIETAGST+TRQK+LKEQYLF
Sbjct:   78 GSSCQKSEWKLHRDECKALTRLEKEKRKFVTPTIRLMVRLYIKRNLQNEKVLPITTTDNYSLVEALVSHMSEIDEKQMLLYAQMANLVNLILQFPSVDLREIAENFSKFSCNAHSICDSELRPQGIGLFPLVSIINHSCSPNAVLVFEEQMAVVRAMDNISKDSEITISYIETAGSTLTRQKSLKEQYLF 267          

HSP 2 Score: 68.9366 bits (167), Expect = 4.417e-87
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 1
Query:  577 GQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSK 714
            G+  DI+ESAILEGYRC ++ C+GFLLRD ++KGF CQ+C L+RSK
Sbjct:  278 GKPHDIEESAILEGYRCANEKCTGFLLRDPEEKGFVCQKCLLLRSK 323          
BLAST of CF509665 vs. ExPASy Swiss-Prot
Match: SMYD2_MOUSE (SET and MYND domain-containing protein 2 OS=Mus musculus GN=Smyd2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 63/192 (32.81%), Postives = 99/192 (51.56%), Query Frame = 3
Query:   12 CQKLDWKLHRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID-EKQLLLYAQIANL---VNLILQWPEISINEIAENFSKLACNAHTICDSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFT 575
            CQK DW LH+LEC  +  L +    S T  +            +       T ++    V    +H+  +D EK+ L+ + IA L    +  L++P+ S   +   F+++ CN  TI D EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ +  G EV  SYI+    T  R   L++ Y FT
Sbjct:   78 CQKEDWPLHKLECSSMVVLGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKYLEFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFT 261          
BLAST of CF509665 vs. ExPASy Swiss-Prot
Match: SMYD2_RAT (SET and MYND domain-containing protein 2 OS=Rattus norvegicus GN=Smyd2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 62/192 (32.29%), Postives = 97/192 (50.52%), Query Frame = 3
Query:   12 CQKLDWKLHRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICDSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFT 575
            CQK DW LH+LEC  +    +    S T  +            +       T ++    V    +H+  +D EK+ L+ + IA L       L++P+ S   +   F+++ CN  TI D EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ +  G EV  SYI+    T  R   L++ Y FT
Sbjct:   78 CQKEDWPLHKLECSSMVVFGENWNPSETVRLTARILAKQKMHPER------TPSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKHLEFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFT 261          
BLAST of CF509665 vs. ExPASy Swiss-Prot
Match: SMYD2_HUMAN (SET and MYND domain-containing protein 2 OS=Homo sapiens GN=SMYD2 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.696e-20
Identity = 59/190 (31.05%), Postives = 96/190 (50.53%), Query Frame = 3
Query:   12 CQKLDWKLHRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID-EKQLLLYAQIANLVNLILQWPEISINE-IAENFSKLACNAHTICDSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFT 575
            CQK DW +H+LEC  +    +    S T  +            +       T ++    V+   +H+  +D EK+ L+ + IA L +   +      N+ +   F+++ CN  TI D EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ +  G EV  SYI+    T  R   L++ Y FT
Sbjct:   78 CQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFT 261          
BLAST of CF509665 vs. ExPASy Swiss-Prot
Match: SMYD3_MOUSE (SET and MYND domain-containing protein 3 OS=Mus musculus GN=Smyd3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.643e-17
Identity = 57/195 (29.23%), Postives = 98/195 (50.26%), Query Frame = 3
Query:    6 SNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIA------ENFSKLACNAHTICDSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLF 572
            + CQK  W  HR EC  L      K +    S+            +     PS +   YS  + L +++S + E +     Q+A      ++      +++       E F+K+ CN+ TIC++E++ +G GLYP +S++NHSC PN  +VF G   ++RAV+ +  G E+ I Y++   ++  R+K L++QY F
Sbjct:   73 AKCQKKAWPDHRRECSCLKSC---KPRYPPDSVRLLGRVIVKLMDEK----PSESEKLYSFYD-LESNISKLTEDKKEGLRQLAMTFQHFMREEIQDASQLPPSFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSMSLLNHSCDPNCSIVFNGPHLLLRAVREIEAGEELTICYLDMLMTSEERRKQLRDQYCF 259          
BLAST of CF509665 vs. ExPASy Swiss-Prot
Match: SMYD3_HUMAN (SET and MYND domain-containing protein 3 OS=Homo sapiens GN=SMYD3 PE=1 SV=4)

HSP 1 Score: 87.0409 bits (214), Expect = 1.060e-16
Identity = 38/90 (42.22%), Postives = 63/90 (70.00%), Query Frame = 3
Query:  303 EIAENFSKLACNAHTICDSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLF 572
            ++ E F+K+ CN+ TIC++E++ +G GLYP IS++NHSC PN  +VF G   ++RAV+ +  G E+ I Y++   ++  R+K L++QY F
Sbjct:  170 DLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCF 259          
BLAST of CF509665 vs. ExPASy Swiss-Prot
Match: SET6_SCHPO (SET domain and MYND-type zinc finger protein 6 OS=Schizosaccharomyces pombe GN=set6 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 54/192 (28.12%), Postives = 86/192 (44.79%), Query Frame = 3
Query:   12 CQKLDWKLHRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLAC----NAHTICDSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFT 575
            CQK DW  H+LEC+ L      K+  + PS+            +N  +I      + +  +A+ +  SD +     L A  A+    I Q         AE F KL C    NA  +  S    LG  L  ++  +NHSC PN  ++F+G +  + + + + K  ++ ISYI+       RQK L ++Y F+
Sbjct:   75 CQKADWPFHKLECKALQA---SKQNGILPSVCRLLIRLYLLWQKNPAII-EPMEGHQNEFQAVSSSWSDAE-----LIASAASHYTQIYQ---------AELFQKLFCRLAVNAMNLVTSSFDSLGMCLDTILCRLNHSCDPNCQIIFDGAIVQLVSKRDIKKDEQLFISYIDIRLPKSIRQKQLLKKYFFS 248          
BLAST of CF509665 vs. ExPASy Swiss-Prot
Match: SMYD1_HUMAN (SET and MYND domain-containing protein 1 OS=Homo sapiens GN=SMYD1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 47/205 (22.93%), Postives = 90/205 (43.90%), Query Frame = 3
Query:   12 CQKLDWKLHRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWP----EISINEIAENFSKLACNAHTICDSE-LRPLGTGLYPVISIINHSCLPNAVLVF-EGRLAVVRAVQH------------VPKGAEVLISYIETAGSTMTRQKALKEQYLF 572
            CQK  W  H+ EC  + R  K   +++  +               +  + S        ++  V H  + ++K L +     ++   +  WP    + S+  I+  F  + CN  T+ D   L+ +G G++P + ++NH C PN  ++F  G    V+++ H            + +G E+ +SYI+    +  R++ LK+QY F
Sbjct:   78 CQKDAWLNHKNECSAIKRYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDD-----LQNHVEHFGEEEQKDLRV-----DVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLNVSEERKRQLKKQYYF 272          
BLAST of CF509665 vs. ExPASy Swiss-Prot
Match: SMYD1_MOUSE (SET and MYND domain-containing protein 1 OS=Mus musculus GN=Smyd1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 47/208 (22.60%), Postives = 92/208 (44.23%), Query Frame = 3
Query:   12 CQKLDWKLHRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWP----EISINEIAENFSKLACNAHTICDSE-LRPLGTGLYPVISIINHSCLPNAVLVF-EGRLAVVRAVQH------------VPKGAEVLISYIETAGSTMTRQKALKEQYLFTWS 581
            CQK  W  H+ EC  + +  K   +++  +               +  + S        ++  V H  + ++K+L +     ++   +  WP    + S+  I+  F  + CN  T+ D   L+ +G G++P + ++NH C PN  ++F  G    V+++ H            + +G E+ +SYI+    +  R++ LK+QY F  S
Sbjct:   73 CQKDAWLNHKNECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDD-----LQNHVEHFGEEEQKELRV-----DVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCS 270          
The following BLAST results are available for this feature:
BLAST of CF509665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ASHR1_ARATH4.417e-8768.95Histone-lysine N-methyltransferase ASHR1 OS=Arabid... [more]
SMYD2_MOUSE2.438e-2132.81SET and MYND domain-containing protein 2 OS=Mus mu... [more]
SMYD2_RAT9.264e-2132.29SET and MYND domain-containing protein 2 OS=Rattus... [more]
SMYD2_HUMAN2.696e-2031.05SET and MYND domain-containing protein 2 OS=Homo s... [more]
SMYD3_MOUSE3.643e-1729.23SET and MYND domain-containing protein 3 OS=Mus mu... [more]
SMYD3_HUMAN1.060e-1642.22SET and MYND domain-containing protein 3 OS=Homo s... [more]
SET6_SCHPO2.069e-1228.13SET domain and MYND-type zinc finger protein 6 OS=... [more]
SMYD1_HUMAN2.287e-1122.93SET and MYND domain-containing protein 1 OS=Homo s... [more]
SMYD1_MOUSE5.095e-1122.60SET and MYND domain-containing protein 1 OS=Mus mu... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-173 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509665 ID=CF509665; Name=CF509665; organism=Citrus sinensis; type=EST; length=716bp
GCGGAAGCAATTGCCAGAAATTGGACTGGAAGTTGCATCGCCTTGAATGC
CAAGTTCTCTCTAGGCTCGACAAGGAGAAACGAAAATCAGTTACACCTTC
TATACGTCTCATGCTGAAACTCTACCTTCGAAGAAAATTGCAAAATGATA
ATGTTATCCCTTCTACCACCACAGACAACTATAGTTTAGTGGAGGCGTTG
GTTGCTCACATGTCAGACATTGATGAGAAGCAACTGCTTTTATATGCTCA
GATCGCCAACCTTGTCAACCTGATTCTTCAGTGGCCAGAGATTAGTATAA
ACGAGATTGCCGAAAACTTTTCCAAGCTTGCTTGCAATGCACATACCATT
TGCGACAGTGAACTAAGGCCCTTGGGGACCGGACTCTATCCTGTCATTTC
TATTATTAATCATAGCTGTTTGCCCAACGCTGTTTTAGTATTTGAGGGAA
GGCTGGCTGTGGTGCGTGCAGTGCAGCATGTACCCAAAGGTGCAGAGGTA
TTAATAAGTTATATAGAAACTGCTGGAAGCACTATGACTCGGCAAAAGGC
ACTAAAAGAACAGTACCTTTTTACTTGGTCAGTTTGATGATATCCAAGAA
AGTGCTATTCTAGAAGGTTACAGGTGCAAGGATGATGGCTGCAGTGGCTT
CTTGCTTCGAGATTCTGATGACAAGGGATTTACATGCCAACAATGTGGCC
TTGTTAGGAGTAAGGA
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