CF509667

Overview
NameCF509667
Unique NameCF509667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7030 contig Csv1_Contig7030:248..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF509667 vs. ExPASy Swiss-Prot
Match: ATP5H_ARATH (ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 6.807e-55
Identity = 100/118 (84.75%), Postives = 111/118 (94.07%), Query Frame = 3 
Query:    6 LQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKPLKESERLEKEIAEVQELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 359
            LQTKFSQEPEPIDW+YYRKGIG+ +VD YK+AY+SIE+PKYVDKVTPEYK KFDALLVELKEAE K LKESERLEKEIA+VQE+ +K+STMTA+EYFEKHPELKKKFDDEIRND WGY
Sbjct:   51 LQTKFSQEPEPIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKESERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168
The following BLAST results are available for this feature:
BLAST of CF509667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP5H_ARATH6.807e-5584.75ATP synthase subunit d, mitochondrial OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-175 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509667 ID=CF509667; Name=CF509667; organism=Citrus sinensis; type=EST; length=592bp
CCACTCTTCAGACCAAGTTCAGCCAGGAACCTGAACCTATTGACTGGGAG
TATTACAGAAAAGGAATTGGCTCTCGCTTGGTGGACATGTACAAACAGGC
TTATGAAAGCATAGAGGTCCCAAAGTATGTAGACAAAGTCACCCCTGAAT
ACAAATCTAAGTTTGATGCTTTGCTGGTGGAATTGAAAGAAGCAGAAGGG
AAACCTCTTAAGGAGTCCGAGCGTTTGGAGAAAGAAATAGCTGAGGTTCA
AGAACTGAAGGAAAAGATCAGCACCATGACCGCTGAGGAATACTTTGAAA
AGCATCCGGAGCTCAAAAAGAAGTTCGATGATGAAATCAGGAATGACTAC
TGGGGCTATTGATCACACATTTGCTCAATTTAGCAGCTGCATTTCCTAGC
TCGGCCAAGATTTTCTGAAGTTGCCCTGTTTTCCCAGCTTGTTAAATAAT
AATGATCATTCGAATTGTTTTTGCATAAACCTGTTGCTCATGGTTTCAAA
AATTTGAGCTTTGATCACATCTATGCTAAACATTCAGTTTTCGTGGCAAT
GCATACATTTTAACTTTAAAGAGCAAATAAAAAAAAAAAAAA
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