CF509670

Overview
NameCF509670
Unique NameCF509670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10556 contig Csv1_Contig10556:419..969. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509670 vs. ExPASy Swiss-Prot
Match: ELP1_MOUSE (Elongator complex protein 1 OS=Mus musculus GN=Ikbkap PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 8.556e-22
Identity = 60/164 (36.59%), Postives = 86/164 (52.44%), Query Frame = 1
Query:    1 SQQDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYSADCLNLMKKYPQLFPLGLKLI-TDPAKMEQVLEAWADHLSDEKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVMKXXXXXXXXXXXXGKPGEAAKIALDY 489
            SQ+DPKE+LP+L  L+ M     R+TID  L+R+E AL H+   G  Y  +CLNL+K    L+   LKL   D  + + V  A+ +HL  E  +E A   +  C + EKA++A+ A G+W   L VA  L++ KD+V               K  EAA +   Y
Sbjct:  911 SQKDPKEYLPFLNTLKKMETNYQRFTIDKYLKRYEKALGHLSKCGPEYFTECLNLIKD-KNLYKEALKLYRPDSPQYQAVSMAYGEHLMQEHLYEPAGLVFARCGAQEKALEAFLACGSWQQALCVAAQLQMSKDKVAGLARTLAGKLVEQRKHSEAATVLEQY 1073          
BLAST of CF509670 vs. ExPASy Swiss-Prot
Match: ELP1_RAT (Elongator complex protein 1 OS=Rattus norvegicus GN=Ikbkap PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.906e-21
Identity = 62/168 (36.90%), Postives = 89/168 (52.98%), Query Frame = 1
Query:    1 SQQDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYSADCLNLMKKYPQLFPLGLKLI-TDPAKMEQVLEAWADHLSDEKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVMKXXXXXXXXXXXXGKPGEAAKI----ALDY 489
            SQ+DPKE+LP+L  L+ M     R+TID  L+R+E AL H+   G  Y  +CLNL+K    L+   LKL   D  + + V  A+ +HL  E  +E A   +  C + EKA++A+ A G+W   L +A  L++ KD+V               K  EAA +    ALDY
Sbjct:  909 SQKDPKEYLPFLNTLKKMETNYQRFTIDKYLKRYEKALGHLSKCGPEYFTECLNLIKD-KNLYKEALKLYRPDSPQYQAVSVAYGEHLVQELLYEPAGLVFARCGAHEKALEAFLACGSWQQALCMAAQLQMAKDKVAGLARTLAGKLVEQRKHSEAATVLEQYALDY 1075          
BLAST of CF509670 vs. ExPASy Swiss-Prot
Match: ELP1_HUMAN (Elongator complex protein 1 OS=Homo sapiens GN=IKBKAP PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 8.008e-20
Identity = 52/138 (37.68%), Postives = 78/138 (56.52%), Query Frame = 1
Query:    1 SQQDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYSADCLNLMKKYPQLFPLGLKLITDPAKMEQVLE-AWADHLSDEKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVM 411
            SQ+DPKE+LP+L  L+ M     R+TID  L+R+E A+ H+   G  Y  +CLNL+K    L+   LKL +  ++  Q +  A+ +HL  E  +E A   +  C + EKA+ A+   GNW   L VA  L   KD+++
Sbjct:  910 SQKDPKEYLPFLNTLKKMETNYQRFTIDKYLKRYEKAIGHLSKCGPEYFPECLNLIKD-KNLYNEALKLYSPSSQQYQDISIAYGEHLMQEHMYEPAGLMFARCGAHEKALSAFLTCGNWKQALCVAAQLNFTKDQLV 1046          
BLAST of CF509670 vs. ExPASy Swiss-Prot
Match: ELP1_RABIT (Elongator complex protein 1 OS=Oryctolagus cuniculus GN=IKBKAP PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.789e-18
Identity = 47/137 (34.31%), Postives = 79/137 (57.66%), Query Frame = 1
Query:    1 SQQDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYSADCLNLMKKYPQLFPLGLKLITDPA-KMEQVLEAWADHLSDEKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEV 408
            SQ+DPKE+LP+L  L+ M     R+TID  L+R+E A+ H+   G  Y ++CLNL+K    L+   LKL    + + + +  A+ +HL +E  +E A   +  C + EKA+ A+   G+W   L +A  L + ++++
Sbjct:  911 SQKDPKEYLPFLNTLKKMETNYQRFTIDKYLKRYEKAIGHLSKCGPEYFSECLNLIKD-KNLYNEALKLYPPTSQEYKDISIAYGEHLMEEHQYEPAGLVFARCGAHEKALSAFLTCGSWQQTLCMAAQLNMTEEQL 1046          
BLAST of CF509670 vs. ExPASy Swiss-Prot
Match: ELP1_XENLA (Putative elongator complex protein 1 OS=Xenopus laevis GN=ikbkap PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.848e-17
Identity = 52/164 (31.71%), Postives = 86/164 (52.44%), Query Frame = 1
Query:    1 SQQDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYSADCLNLMKKYPQLFPLGLKLIT-DPAKMEQVLEAWADHLSDEKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVMKXXXXXXXXXXXXGKPGEAAKIALDY 489
            SQ+DPKE+LP+L +L+ M     RYTID  L+R++ AL ++   G  Y  + L+ +K    L+   L+L      + + +  A+ DHL  ++ +E A   Y  C+S+EKA+ A+ ASGNW  V+ +A  L+   +++               K  +AA +   Y
Sbjct:  747 SQKDPKEYLPFLNKLKKMETNYQRYTIDKHLKRYKKALSNLSKCGPDYFTEFLSFVKD-QSLYTEALELYPHGTVEYKAINAAYGDHLVSKQQYELAGLIYARCNSIEKALDAFIASGNWHQVMCMASQLEYSGEKIAALARTVAGKLVEQRKQADAAVLLEQY 909          
BLAST of CF509670 vs. ExPASy Swiss-Prot
Match: ELP1_YEAST (Elongator complex protein 1 OS=Saccharomyces cerevisiae GN=IKI3 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 42/129 (32.56%), Postives = 72/129 (55.81%), Query Frame = 1
Query:    1 SQQDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHI--VSMGDSYSADCLNLMKKYPQLFPLGLKLIT-DPAKMEQVLEAWADHLSDEKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVA 378
            SQ DP+E+LP+LQEL+   PL  ++ ID  L  +E AL+H+  +    + S + ++ ++ +  L+  GL L   D  K   +   +A HLS  + + DAA  Y     L++AM AY+++  W   +++A
Sbjct:  944 SQMDPREYLPFLQELQDNEPLRRKFLIDDYLGNYEKALEHLSEIDKDGNVSEEVIDYVESH-DLYKHGLALYRYDSEKQNVIYNIYAKHLSSNQMYTDAAVAYEMLGKLKEAMGAYQSAKRWREAMSIA 1071          
BLAST of CF509670 vs. ExPASy Swiss-Prot
Match: ELP1_DROME (Putative elongator complex protein 1 OS=Drosophila melanogaster GN=CG10535 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.617e-12
Identity = 46/165 (27.88%), Postives = 89/165 (53.94%), Query Frame = 1
Query:    1 SQQDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYSADCLNLMKKYPQLFPLGLKLITDPAKMEQ-VLEAWADHLSDEKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVMKXXXXXXXXXXXXGKPGEAAKIALDYC 492
            SQ+DPKEFLPYL +L+++P    ++ ID  L+R+ +AL H+ + G+ +  + L  ++K+  L+  GL    +  + ++ +  A+ADHL      ++A+  Y     L++A+ + + + +W  VL +A  L    D+V +            G+  EA ++  ++C
Sbjct:  839 SQKDPKEFLPYLNDLKALPIDYRKFRIDDHLKRYTSALSHLAACGEQHYEEALEYIRKH-GLYTDGLAFYREHIEFQKNIYVAYADHLRAIAKLDNASLMYERGGQLQQALLSAKHTLDWQRVLVLAKKLSEPLDQVAQ---SLVGPLQQQGRHMEAYELVKEHC 999          
BLAST of CF509670 vs. ExPASy Swiss-Prot
Match: ELP1_SCHPO (Elongator complex protein 1 OS=Schizosaccharomyces pombe GN=iki3 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.795e-11
Identity = 37/126 (29.37%), Postives = 69/126 (54.76%), Query Frame = 1
Query:    1 SQQDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYSADCLNLMKKYPQLFPLGLKLIT-DPAKMEQVLEAWADHLSDEKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTV 375
            SQ+DP+E++P+L E +    L  ++ ID  L+R+E AL H+  M +++  D         +L+P  L+L   D    ++VL  +A +L +     +AA  Y     + +A++AY+++G W   L++
Sbjct:  855 SQKDPREYVPFLHEFQKQESLRRKFNIDCYLKRYERALGHLKEMENAF--DEFKNFTIQHKLYPRALELYKYDKEAQKEVLIIFAQYLRENGKSNEAAIAYESVGKISEAIEAYKSAGMWRECLSI 978          
The following BLAST results are available for this feature:
BLAST of CF509670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ELP1_MOUSE8.556e-2236.59Elongator complex protein 1 OS=Mus musculus GN=Ikb... [more]
ELP1_RAT1.906e-2136.90Elongator complex protein 1 OS=Rattus norvegicus G... [more]
ELP1_HUMAN8.008e-2037.68Elongator complex protein 1 OS=Homo sapiens GN=IKB... [more]
ELP1_RABIT9.789e-1834.31Elongator complex protein 1 OS=Oryctolagus cunicul... [more]
ELP1_XENLA2.848e-1731.71Putative elongator complex protein 1 OS=Xenopus la... [more]
ELP1_YEAST1.463e-1332.56Elongator complex protein 1 OS=Saccharomyces cerev... [more]
ELP1_DROME1.617e-1227.88Putative elongator complex protein 1 OS=Drosophila... [more]
ELP1_SCHPO6.795e-1129.37Elongator complex protein 1 OS=Schizosaccharomyces... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-178 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509670 ID=CF509670; Name=CF509670; organism=Citrus sinensis; type=EST; length=551bp
TCCCAACAGGACCCAAAGGAGTTTCTGCCTTACCTTCAAGAATTGGAAAG
TATGCCACCTCTCTTGATGCGCTATACAATAGACCTTAGGCTGCAGAGGT
TTGAGAATGCTCTCAAACACATTGTTTCCATGGGTGATTCCTACTCTGCA
GATTGTTTGAACCTCATGAAGAAATATCCTCAACTTTTTCCACTTGGACT
TAAACTGATAACTGATCCTGCCAAGATGGAGCAGGTCCTTGAGGCTTGGG
CAGATCATCTTAGTGATGAAAAATGCTTTGAAGATGCTGCTACTACCTAT
TTTTGTTGTTCCAGTTTGGAAAAGGCTATGAAGGCGTACCGTGCTTCTGG
TAATTGGAGTGGGGTGCTGACAGTTGCTGGACTTCTTAAATTGGGAAAAG
ATGAAGTTATGAAACTGGCTCAGGAGCTCTGTGAAGAACTCCAAGCCCTT
GGTAAACCAGGGGAAGCTGCCAAAATTGCTCTGGATTATTGTGGGGGATG
TTACCAATGGTATAAGTTTGTTAATTGATGCAAGGGACTGGGAGGAGGCT
T
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