CF509677
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 5.177e-34 Identity = 85/146 (58.22%), Postives = 95/146 (65.07%), Query Frame = 1 Query: 10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQSC*GMLGLPLLVFEER------IQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAM 429 MSRGSGGGYDRHITIFSPEG+ F++ G+ + + Q TS VSH+F ++ L GMTADARTLV QAR EAAEFRFKYGYEMPVDVL+KWIADKSQVYTQHAYMRPLGVVAM Sbjct: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAV-KAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTS-----VSHLFPITKY-LGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVYTQHAYMRPLGVVAM 139
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 1.665e-32 Identity = 80/140 (57.14%), Postives = 90/140 (64.29%), Query Frame = 1 Query: 10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQSC*GMLGLPLLVFEERIQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAM 429 MSRGSGGGY+RHITIFSPEG+ F++ + V + V+H+F ++ L GMTADARTLV QAR EAAEFRF YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAM Sbjct: 1 MSRGSGGGYNRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKLLDNTSVTHLFPITKY-LGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAM 139
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 8.265e-32 Identity = 78/149 (52.35%), Postives = 96/149 (64.43%), Query Frame = 1 Query: 10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQS--C*GMLGLPL-------LVFEERIQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAM 429 MSRGSG GYDRHITIFSPEG+ F++ G+ + + +V ++++ VSH+F ++ L GMTAD+R+LV QAR EAAEFRF+YGYEMP D+LAKWIADKSQVYTQHAYMRPLGVVAM Sbjct: 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQS---------SVSHLFPVTKY-LGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAYMRPLGVVAM 139
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 4.102e-31 Identity = 75/140 (53.57%), Postives = 91/140 (65.00%), Query Frame = 1 Query: 10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQSC*GMLGLPLLVFEERIQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAM 429 MSRG+G GYDRHITIFSPEG+ F++ + V + V+H+F ++ + G+TADAR+LV+QAR EAAEFRFK+GYEMPVDVLAKWIADK+QVYTQHAYMRPLGVVAM Sbjct: 1 MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKY-IGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAM 139
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2) HSP 1 Score: 131.724 bits (330), Expect = 1.193e-30 Identity = 77/149 (51.68%), Postives = 95/149 (63.76%), Query Frame = 1 Query: 10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQSC*-------GMLGLP--LLVFEERIQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAM 429 MSRGSG GYDRHITIFSPEG+ F++ G+ G +V ++++ V+H+F ++ + G+TADAR+LV QAR +AAEFRF YGYEMPVD+LAKWIADKSQVYTQHAYMRPLGVVAM Sbjct: 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQS---------SVTHLFPITKY-IGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVAM 139
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6_MOUSE (Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.410e-23 Identity = 63/145 (43.45%), Postives = 89/145 (61.38%), Query Frame = 1 Query: 10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQSC*--GMLGLPL-------LVFEERIQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLG 417 MSRGS G+DRHITIFSPEG+ F++ G+ + + +V ++++ V+H+F ++S + C GMTAD+R+ V +ARYEAA +++KYGYE+PVD+L K IAD SQVYTQ+A MRPLG Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSST---------VTHLFKITES-IGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLG 135
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 5.370e-23 Identity = 62/145 (42.76%), Postives = 89/145 (61.38%), Query Frame = 1 Query: 10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQSC*--GMLGLPL-------LVFEERIQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLG 417 MSRGS G+DRHITIFSPEG+ F++ G+ + + +V ++++ V+H+F +++ + C GMTAD+R+ V +ARYEAA +++KYGYE+PVD+L K IAD SQVYTQ+A MRPLG Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSST---------VTHLFKITEN-IGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLG 135
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 5.370e-23 Identity = 62/145 (42.76%), Postives = 89/145 (61.38%), Query Frame = 1 Query: 10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQSC*--GMLGLPL-------LVFEERIQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLG 417 MSRGS G+DRHITIFSPEG+ F++ G+ + + +V ++++ V+H+F +++ + C GMTAD+R+ V +ARYEAA +++KYGYE+PVD+L K IAD SQVYTQ+A MRPLG Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSST---------VTHLFKITEN-IGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLG 135
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 5.370e-23 Identity = 62/145 (42.76%), Postives = 89/145 (61.38%), Query Frame = 1 Query: 10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQSC*--GMLGLPL-------LVFEERIQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLG 417 MSRGS G+DRHITIFSPEG+ F++ G+ + + +V ++++ V+H+F +++ + C GMTAD+R+ V +ARYEAA +++KYGYE+PVD+L K IAD SQVYTQ+A MRPLG Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSST---------VTHLFKITEN-IGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLG 135
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6_DROME (Proteasome subunit alpha type-6 OS=Drosophila melanogaster GN=Prosalpha1 PE=2 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 3.481e-22 Identity = 60/136 (44.12%), Postives = 79/136 (58.09%), Query Frame = 1 Query: 10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQSC*GMLGLPLLVFEERIQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLG 417 MSRGS G+DRHITIFSPEG+ F++ + + + V+H+F ++ + C G AD+R+ V +ARYEAA FR+KYGYEMPVDVL + IAD +QVYTQ+A MRPLG Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPETVTHLFRITKD-IGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAEMRPLG 135 The following BLAST results are available for this feature:
BLAST of CF509677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >CF509677 ID=CF509677; Name=CF509677; organism=Citrus sinensis; type=EST; length=430bpback to top |