CF509677

Overview
NameCF509677
Unique NameCF509677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10887 contig Csv1_Contig10887:148..574. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.177e-34
Identity = 85/146 (58.22%), Postives = 95/146 (65.07%), Query Frame = 1
Query:   10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQSC*GMLGLPLLVFEER------IQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAM 429
            MSRGSGGGYDRHITIFSPEG+       F++     G+  +    +       Q          TS     VSH+F  ++  L     GMTADARTLV QAR EAAEFRFKYGYEMPVDVL+KWIADKSQVYTQHAYMRPLGVVAM
Sbjct:    1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAV-KAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTS-----VSHLFPITKY-LGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVYTQHAYMRPLGVVAM 139          
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 1.665e-32
Identity = 80/140 (57.14%), Postives = 90/140 (64.29%), Query Frame = 1
Query:   10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQSC*GMLGLPLLVFEERIQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAM 429
            MSRGSGGGY+RHITIFSPEG+       F++        + V  +                    V+H+F  ++  L     GMTADARTLV QAR EAAEFRF YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAM
Sbjct:    1 MSRGSGGGYNRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKLLDNTSVTHLFPITKY-LGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAM 139          
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 8.265e-32
Identity = 78/149 (52.35%), Postives = 96/149 (64.43%), Query Frame = 1
Query:   10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQS--C*GMLGLPL-------LVFEERIQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAM 429
            MSRGSG GYDRHITIFSPEG+       F++    G+  + +       +V ++++                  VSH+F  ++  L     GMTAD+R+LV QAR EAAEFRF+YGYEMP D+LAKWIADKSQVYTQHAYMRPLGVVAM
Sbjct:    1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQS---------SVSHLFPVTKY-LGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAYMRPLGVVAM 139          
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.102e-31
Identity = 75/140 (53.57%), Postives = 91/140 (65.00%), Query Frame = 1
Query:   10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQSC*GMLGLPLLVFEERIQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAM 429
            MSRG+G GYDRHITIFSPEG+       F++        + V  +                    V+H+F  ++  +     G+TADAR+LV+QAR EAAEFRFK+GYEMPVDVLAKWIADK+QVYTQHAYMRPLGVVAM
Sbjct:    1 MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKY-IGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAM 139          
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.193e-30
Identity = 77/149 (51.68%), Postives = 95/149 (63.76%), Query Frame = 1
Query:   10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQSC*-------GMLGLP--LLVFEERIQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAM 429
            MSRGSG GYDRHITIFSPEG+       F++         G+ G     +V ++++                  V+H+F  ++  +     G+TADAR+LV QAR +AAEFRF YGYEMPVD+LAKWIADKSQVYTQHAYMRPLGVVAM
Sbjct:    1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQS---------SVTHLFPITKY-IGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVAM 139          
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6_MOUSE (Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.410e-23
Identity = 63/145 (43.45%), Postives = 89/145 (61.38%), Query Frame = 1
Query:   10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQSC*--GMLGLPL-------LVFEERIQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLG 417
            MSRGS  G+DRHITIFSPEG+       F++    G+  + +       +V ++++                  V+H+F  ++S + C   GMTAD+R+ V +ARYEAA +++KYGYE+PVD+L K IAD SQVYTQ+A MRPLG
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSST---------VTHLFKITES-IGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLG 135          
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.370e-23
Identity = 62/145 (42.76%), Postives = 89/145 (61.38%), Query Frame = 1
Query:   10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQSC*--GMLGLPL-------LVFEERIQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLG 417
            MSRGS  G+DRHITIFSPEG+       F++    G+  + +       +V ++++                  V+H+F  +++ + C   GMTAD+R+ V +ARYEAA +++KYGYE+PVD+L K IAD SQVYTQ+A MRPLG
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSST---------VTHLFKITEN-IGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLG 135          
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.370e-23
Identity = 62/145 (42.76%), Postives = 89/145 (61.38%), Query Frame = 1
Query:   10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQSC*--GMLGLPL-------LVFEERIQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLG 417
            MSRGS  G+DRHITIFSPEG+       F++    G+  + +       +V ++++                  V+H+F  +++ + C   GMTAD+R+ V +ARYEAA +++KYGYE+PVD+L K IAD SQVYTQ+A MRPLG
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSST---------VTHLFKITEN-IGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLG 135          
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.370e-23
Identity = 62/145 (42.76%), Postives = 89/145 (61.38%), Query Frame = 1
Query:   10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQSC*--GMLGLPL-------LVFEERIQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLG 417
            MSRGS  G+DRHITIFSPEG+       F++    G+  + +       +V ++++                  V+H+F  +++ + C   GMTAD+R+ V +ARYEAA +++KYGYE+PVD+L K IAD SQVYTQ+A MRPLG
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSST---------VTHLFKITEN-IGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLG 135          
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6_DROME (Proteasome subunit alpha type-6 OS=Drosophila melanogaster GN=Prosalpha1 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 3.481e-22
Identity = 60/136 (44.12%), Postives = 79/136 (58.09%), Query Frame = 1
Query:   10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQSC*GMLGLPLLVFEERIQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLG 417
            MSRGS  G+DRHITIFSPEG+       F++        + +                 +     V+H+F  ++  + C   G  AD+R+ V +ARYEAA FR+KYGYEMPVDVL + IAD +QVYTQ+A MRPLG
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPETVTHLFRITKD-IGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAEMRPLG 135          
The following BLAST results are available for this feature:
BLAST of CF509677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PSA6_TOBAC5.177e-3458.22Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]
PSA6_SOYBN1.665e-3257.14Proteasome subunit alpha type-6 OS=Glycine max GN=... [more]
PSA6B_ARATH8.265e-3252.35Proteasome subunit alpha type-6-B OS=Arabidopsis t... [more]
PSA6_ORYSJ4.102e-3153.57Proteasome subunit alpha type-6 OS=Oryza sativa su... [more]
PSA6A_ARATH1.193e-3051.68Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA6_MOUSE2.410e-2343.45Proteasome subunit alpha type-6 OS=Mus musculus GN... [more]
PSA6_RAT5.370e-2342.76Proteasome subunit alpha type-6 OS=Rattus norvegic... [more]
PSA6_HUMAN5.370e-2342.76Proteasome subunit alpha type-6 OS=Homo sapiens GN... [more]
PSA6_BOVIN5.370e-2342.76Proteasome subunit alpha type-6 OS=Bos taurus GN=P... [more]
PSA6_DROME3.481e-2244.12Proteasome subunit alpha type-6 OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-185 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509677 ID=CF509677; Name=CF509677; organism=Citrus sinensis; type=EST; length=430bp
TAATCAACAATGAGTAGAGGAAGTGGAGGAGGATACGATCGTCATATTAC
AATTTTTTCGCCTGAGGGTCAGTCTCTTTCAAGTCGAGTATGCTTTCAAA
GCTGTTAAGGCATGCTGGGGTTACCTCTATTGGTGTTCGAGGAAAGGATT
CAGTCTGTGTTGTGACTCAGAAGAAGGTCCCGGACAAGCTTTTGGATCAT
ACAAGTGTCACACATCTTTTCCCAATCACAAAGTACCTTGGATTGCTGGC
AACCTGGAATGACAGCTGATGCAAGGACATTGGTTCATCAGGCAAGATAT
GAAGCCGCTGAGTTTCGCTTCAAATATGGATATGAAATGCCTGTGGATGT
GTTAGCCAAATGGATTGCAGACAAATCACAAGTATATACTCAACATGCTT
ATATGAGACCACTTGGTGTAGTTGCTATGG
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