CF509687

Overview
NameCF509687
Unique NameCF509687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6970 contig Csv1_Contig6970:345..1050. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509687 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 56/181 (30.94%), Postives = 85/181 (46.96%), Query Frame = 1
Query:    1 CDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTS-----EDKGILGMNLGRLSFASQAKISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKE 528
            C+ N  C Y+Y Y DG+  +G +  E FTF  + S   +  GC +D          G++GM  G LS  SQ  + +FSYC+ +     G +   +  LG   +       S      S     L+P  Y + +QG+ + G  L IP++ F     G+G  I+DSG+  TYL   AYN + +
Sbjct:  164 CNNNE-CQYTYGYGDGSTTQGYMATETFTFETS-SVPNIAFGCGEDNQGFGQGNGAGLIGMGWGPLSLPSQLGVGQFSYCMTS----YGSSSPSTLALGSAASGVPEGSPSTTLIHSS-----LNPTYYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQ 333          
BLAST of CF509687 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 63/224 (28.12%), Postives = 102/224 (45.54%), Query Frame = 1
Query:   10 NRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTS-----EDKGILGMNLGRLSFASQAKISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDAS-GSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERG 663
            N  C Y+Y Y DG+  +G++  E  TF +  S   +  GC ++          G++GM  G LS  SQ  ++KFSYC+    + +G +   +  LG   NS      +      SQ      P  Y + + G+ +   RL I  +AF  +++ G+G  I+DSG+  TY V+ AY  +++E +      +  G   G   D+CF   +      I   V  F+ G
Sbjct:  165 NNFCQYTYGYGDGSETQGSMGTETLTFGSV-SIPNITFGCGENNQGFGQGNGAGLVGMGRGPLSLPSQLDVTKFSYCM----TPIGSSTPSNLLLGSLANSVTAGSPNTTLIQSSQI-----PTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQINLPVVNGSSSG--FDLCFQTPSDPSNLQIPTFVMHFDGG 376          
The following BLAST results are available for this feature:
BLAST of CF509687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP2_NEPGR3.599e-1730.94Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
NEP1_NEPGR1.047e-1628.13Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-195 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509687 ID=CF509687; Name=CF509687; organism=Citrus sinensis; type=EST; length=706bp
TGCGACCAGAACCGTTTGTGCCATTACTCTTACTTCTACGCAGATGGTAC
GTTCGCCGAGGGTAATCTCGTCAAAGAAAAATTCACCTTCTCTGCTGCCC
AGAGCACCCTTCCTTTGATTCTCGGCTGCGCTAAGGATACGAGCGAGGAC
AAGGGTATTCTGGGAATGAACCTTGGACGGTTGTCTTTCGCTTCCCAAGC
GAAAATATCCAAGTTCTCCTATTGTGTCCCGACCCGAGTGTCTCGAGTCG
GGTACACACCAACCGGGTCGTTTTACCTTGGTGAGAACCCGAACTCAGCC
GGGTTCCGCTACGTCAGCTTCTTGACTTTCCCTCAAAGTCAACGCTCTCC
AAATTTGGATCCTCTGGCGTACAGTGTTCCCATGCAAGGGGTTCGAATTC
AAGGCAAAAGACTGGATATTCCAGCCACGGCTTTCCACCCGGATGCTAGC
GGGTCGGGTCAGACCATCGTCGATTCGGGATCCGAGTTCACTTACTTGGT
GGACGTGGCTTATAATAAAATTAAAGAAGAAATCGTGAGGCTCGCGGGAC
CCAGGATGAAGAAGGGGTACGTGTACGGTGGAGTAGCCGACATGTGTTTC
GATGGAAATGCGATGGAGGTCGGGCGGTTGATAGGCGACATGGTATTCGA
ATTTGAGAGAGGCGTGGAGATTCTGATTGAAAAAGAAAGAGTATTAGCTG
ATGTCG
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