CF509689

Overview
NameCF509689
Unique NameCF509689
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig905 contig Csv1_Contig905:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509689 vs. ExPASy Swiss-Prot
Match: IF41_WHEAT (Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 3.909e-74
Identity = 146/239 (61.09%), Postives = 177/239 (74.06%), Query Frame = 1
Query:    4 ERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQA------RYLEADNRDWRTRSTTSG-----QEKSLEANQEKMEFGAHEGQLNSQFASAQISTNQGA--GPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQ 681
            ERVRY+R+QLL L+++  +TE IL+++QEIE+E +G+ QSW     N  LQ+Q Q       R+ E DNRDWR R+         +EKS +  +E  E     G+   QF     S++Q A  GP PALIKA+VPWSARRGNLSEKDRVLKTVKGILNKLTPEKFD+LKGQL+DSGITT DILK VI LIF+KAV EPTFCPMYA LCS+LN+ LP FPS+EPGGK+ITFKR+LLN+CQ
Sbjct:   62 ERVRYSRDQLLDLRKITDVTEQILRLQQEIEAELNGDDQSWVRNDSNVQLQTQAQPQVQAQNRFTETDNRDWRARTEKPPAPAVQEEKSWDNIREVKEQYNASGRQQEQFNRQDQSSSQKAQVGPPPALIKADVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDLLKGQLLDSGITTADILKDVISLIFEKAVFEPTFCPMYAQLCSELNDNLPTFPSEEPGGKEITFKRVLLNNCQ 300          
BLAST of CF509689 vs. ExPASy Swiss-Prot
Match: C3H43_ORYSJ (Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa subsp. japonica GN=Os06g0520600 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.557e-41
Identity = 99/239 (41.42%), Postives = 143/239 (59.83%), Query Frame = 1
Query:    1 HERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWRTRSTTSGQEKSLEAN----QEKMEFGAHEGQLNSQFASAQISTNQG-------AGPAPA-LIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQ 681
            H+R+ YTR+QLLQL +  ++ +DILK  Q+I  E +GE +  G  AE +++Q+    R+   D+RDW + S  +  E+    N    +E    G  + + N    S+    ++          P  + LIKAEVP S +RG +S KD VLKT+K ILN  +P+ FD+ KGQLI++ I++ DILK VI LIF+K V EP FC  YA LC+ LN+ L PFP ++   ++ITFK+ L N CQ
Sbjct:  235 HQRISYTRDQLLQLCQNVEVPKDILKFCQDINVELNGEDKISGFGAEKDHVQTPSYKRFDATDSRDWHSWSAQTNWEQKFWDNFSEAKEPYSLGWKQEKFNKPDQSSFHFDSKDQWLKFIKCTPCKSTLIKAEVPLSIQRGIISGKDEVLKTLKSILNTFSPKMFDLQKGQLIETRISSADILKDVINLIFEKVVAEPAFCSTYAQLCTYLNQNLTPFPPEDCDCEEITFKQALSNKCQ 473          
BLAST of CF509689 vs. ExPASy Swiss-Prot
Match: IF4G1_ARATH (Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.857e-16
Identity = 50/116 (43.10%), Postives = 68/116 (58.62%), Query Frame = 1
Query:  337 PAPALIKAEVPWSARRGNLSEKDRVL-KTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQ 681
            P   + KAE  +    G ++++++   + +K ILNKLTP+ F+ L  Q+    I     L GVI  IFDKA++EPTFC MYA  C  L+  LP F      G+ ITFKR+LLN CQ
Sbjct: 1070 PMQVMHKAERKYQV--GTIADEEQAKQRQLKSILNKLTPQNFEKLFEQVKSVNIDNAVTLSGVISQIFDKALMEPTFCEMYADFCFHLSGALPDF---NENGEKITFKRLLLNKCQ 1180          
BLAST of CF509689 vs. ExPASy Swiss-Prot
Match: IF4G2_RABIT (Eukaryotic translation initiation factor 4 gamma 2 OS=Oryctolagus cuniculus GN=EIF4G2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15
Identity = 50/111 (45.05%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  373 SARRGNLSEKDR---VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLP----PFPSDEPGGK-DITFKRILLNHCQ 681
            SA   + +EK+R   + + V+GILNKLTPEKFD L  +L++ G+ +  ILKGVI LI DKA+ EP +  +YA LC  L E  P    P    +PG K   TF+R+L++  Q
Sbjct:   62 SAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQ 172          
BLAST of CF509689 vs. ExPASy Swiss-Prot
Match: IF4G2_PONAB (Eukaryotic translation initiation factor 4 gamma 2 OS=Pongo abelii GN=EIF4G2 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15
Identity = 50/111 (45.05%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  373 SARRGNLSEKDR---VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLP----PFPSDEPGGK-DITFKRILLNHCQ 681
            SA   + +EK+R   + + V+GILNKLTPEKFD L  +L++ G+ +  ILKGVI LI DKA+ EP +  +YA LC  L E  P    P    +PG K   TF+R+L++  Q
Sbjct:   62 SAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQ 172          
BLAST of CF509689 vs. ExPASy Swiss-Prot
Match: IF4G2_MOUSE (Eukaryotic translation initiation factor 4 gamma 2 OS=Mus musculus GN=Eif4g2 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15
Identity = 50/111 (45.05%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  373 SARRGNLSEKDR---VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLP----PFPSDEPGGK-DITFKRILLNHCQ 681
            SA   + +EK+R   + + V+GILNKLTPEKFD L  +L++ G+ +  ILKGVI LI DKA+ EP +  +YA LC  L E  P    P    +PG K   TF+R+L++  Q
Sbjct:   62 SAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQ 172          
BLAST of CF509689 vs. ExPASy Swiss-Prot
Match: IF4G2_HUMAN (Eukaryotic translation initiation factor 4 gamma 2 OS=Homo sapiens GN=EIF4G2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15
Identity = 50/111 (45.05%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  373 SARRGNLSEKDR---VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLP----PFPSDEPGGK-DITFKRILLNHCQ 681
            SA   + +EK+R   + + V+GILNKLTPEKFD L  +L++ G+ +  ILKGVI LI DKA+ EP +  +YA LC  L E  P    P    +PG K   TF+R+L++  Q
Sbjct:   62 SAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQ 172          
BLAST of CF509689 vs. ExPASy Swiss-Prot
Match: IF4G2_BOVIN (Eukaryotic translation initiation factor 4 gamma 2 OS=Bos taurus GN=EIF4G2 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15
Identity = 50/111 (45.05%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  373 SARRGNLSEKDR---VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLP----PFPSDEPGGK-DITFKRILLNHCQ 681
            SA   + +EK+R   + + V+GILNKLTPEKFD L  +L++ G+ +  ILKGVI LI DKA+ EP +  +YA LC  L E  P    P    +PG K   TF+R+L++  Q
Sbjct:   62 SAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQ 172          
BLAST of CF509689 vs. ExPASy Swiss-Prot
Match: IF4G3_HUMAN (Eukaryotic translation initiation factor 4 gamma 3 OS=Homo sapiens GN=EIF4G3 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  349 LIKAEVPW--SARRGNLSEKDRVLKT------VKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQ 681
            L KAE  W  S +R + ++    +KT      V+ ILNKLTP+ F+ L  Q+    + T + LKGVI+L+F+KA+ EP+F   YA +C  L     P  +D+P G  + F+++LLN CQ
Sbjct:  726 LKKAENAWKPSQKRDSQADDPENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPM-ADKP-GNTVNFRKLLLNRCQ 842          
BLAST of CF509689 vs. ExPASy Swiss-Prot
Match: IF4G3_MOUSE (Eukaryotic translation initiation factor 4 gamma 3 OS=Mus musculus GN=Eif4g3 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.120e-12
Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  349 LIKAEVPW--SARRGNLSEKDRVLKT------VKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQ 681
            L KAE  W  S +R + ++    +KT      V+ ILNKLTP+ F+ L  Q+    + T + LKGVI+L+F+KA+ EP+F   YA +C  L     P  +D+P G  + F+++LLN CQ
Sbjct:  721 LRKAENAWKPSQKRDSHADDPESIKTQELFRKVRSILNKLTPQMFNQLMKQVSALTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPM-ADKP-GNTVNFRKLLLNRCQ 837          
The following BLAST results are available for this feature:
BLAST of CF509689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
IF41_WHEAT3.909e-7461.09Eukaryotic initiation factor iso-4F subunit p82-34... [more]
C3H43_ORYSJ2.557e-4141.42Zinc finger CCCH domain-containing protein 43 OS=O... [more]
IF4G1_ARATH4.857e-1643.10Eukaryotic translation initiation factor 4G OS=Ara... [more]
IF4G2_RABIT3.148e-1545.05Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G2_PONAB3.148e-1545.05Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G2_MOUSE3.148e-1545.05Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G2_HUMAN3.148e-1545.05Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G2_BOVIN3.148e-1545.05Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G3_HUMAN8.573e-1339.50Eukaryotic translation initiation factor 4 gamma 3... [more]
IF4G3_MOUSE1.120e-1239.50Eukaryotic translation initiation factor 4 gamma 3... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-197 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509689 ID=CF509689; Name=CF509689; organism=Citrus sinensis; type=EST; length=682bp
CATGAACGTGTTCGATACACCCGAGAGCAGCTGTTACAACTTAAGGAGGT
TGCTCAACTAACTGAAGACATTTTGAAGATAAAGCAAGAAATTGAGTCTG
AGTTTGATGGCGAAGGTCAAAGCTGGGGTGGTCGTGCAGAAAATAACAAT
CTGCAATCTCAATTCCAAGCTCGTTACTTGGAGGCAGACAATCGTGATTG
GCGTACTCGATCAACCACCTCTGGACAAGAGAAATCCTTGGAAGCAAATC
AAGAAAAGATGGAATTTGGTGCTCATGAGGGCCAACTTAATTCCCAGTTC
GCAAGTGCTCAAATCTCCACTAACCAAGGGGCAGGACCTGCTCCAGCTCT
AATTAAGGCTGAAGTTCCATGGTCAGCAAGACGAGGAAATCTCTCAGAGA
AGGATCGTGTTCTTAAGACTGTTAAAGGAATACTGAATAAATTGACTCCA
GAGAAGTTTGATGTTCTCAAGGGTCAGCTAATAGACTCTGGAATTACAAC
CCCAGATATTCTGAAGGGTGTTATTGAACTTATATTTGATAAGGCTGTCT
TGGAGCCTACATTTTGTCCCATGTATGCACTTTTATGCTCTGACCTTAAC
GAGAAGCTTCCTCCATTTCCTTCTGATGAGCCTGGTGGGAAAGATATCAC
CTTTAAGCGGATCCTTTTGAATCATTGCCAGG
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