CF509692 | Citrus Genome Database

Overview


Name	CF509692
Unique Name	CF509692
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	593

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig3410	contig	Csv1_Contig3410:84..677.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF509692 vs. ExPASy Swiss-Prot
Match: NACA1_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.253e-41
Identity = 62/74 (83.78%), Postives = 68/74 (91.89%), Query Frame = 1

Query:  247 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPTQVM 468
            AMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP SDTY++FGEAKIEDLSSQ+Q+QAAEQFK P  + V+
Sbjct:   69 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQIQSQAAEQFKAPDLSNVI 142

HSP 2 Score: 64.6994 bits (156), Expect = 2.253e-41
Identity = 36/45 (80.00%), Postives = 37/45 (82.22%), Query Frame = 3

Query:  465 NVASKPESS--AMVQDDEEVDETGVEPKDIELVMTQAGVPRSRAV 593
            NV SK ESS  A+VQDDEEVDE GVEPKDIELVMTQAGV R  AV
Sbjct:  140 NVISKGESSSAAVVQDDEEVDEEGVEPKDIELVMTQAGVSRPNAV 184

[Close]

BLAST of CF509692 vs. ExPASy Swiss-Prot
Match: NACA_PINTA (Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.102e-40
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 1

Query:  247 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVP 450
            AMLKLGMKP+ GVSRVT+KKSKNILFVIS PDVFKSPTSDTYI FGEAKIEDLSSQLQTQAAEQFK P
Sbjct:   72 AMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSDTYIAFGEAKIEDLSSQLQTQAAEQFKAP 139

HSP 2 Score: 62.3882 bits (150), Expect = 1.102e-40
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 3

Query:  465 NVASKPESSAMVQDDE-EVDETGVEPKDIELVMTQAGVPRSRAV 593
            +V  KPESS   Q+DE EVD+TGVEPKDIELVMTQAGV R++AV
Sbjct:  143 HVTMKPESSTAAQEDEDEVDDTGVEPKDIELVMTQAGVSRTKAV 186

[Close]

BLAST of CF509692 vs. ExPASy Swiss-Prot
Match: NACA3_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 7.605e-39
Identity = 63/74 (85.14%), Postives = 68/74 (91.89%), Query Frame = 1

Query:  247 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPTQVM 468
            AMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP SDTY++FGEAKIEDLSSQLQ+QAAEQFK P  + V+
Sbjct:   65 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQLQSQAAEQFKAPNLSNVI 138

HSP 2 Score: 55.8398 bits (133), Expect = 7.605e-39
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 3

Query:  465 NVASKPESS-----AMVQDD--EEVDETGVEPKDIELVMTQAGVPRSRAV 593
            NV S+ E+S     A VQDD  EEVDE GVEPKDIELVMTQAGV + RAV
Sbjct:  136 NVISQGETSSAATAAAVQDDDDEEVDEEGVEPKDIELVMTQAGVSKPRAV 185

[Close]

BLAST of CF509692 vs. ExPASy Swiss-Prot
Match: NACA2_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.249e-35
Identity = 54/68 (79.41%), Postives = 65/68 (95.59%), Query Frame = 1

Query:  247 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVP 450
            AMLKLGMKP+ GVSRVT+K++KN+LF ISKPDVFKSP S+TY++FGEAKIEDLSSQLQTQAA+QF++P
Sbjct:   79 AMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQTQAAQQFRMP 146

HSP 2 Score: 53.5286 bits (127), Expect = 1.249e-35
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 3

Query:  444 GPSSYTGNVASKPESSAMVQDDEEVDETGVEPKDIELVMTQAGVPRSRAV 593
            G +S     ++    + + +D+EE+DETGVE +DI+LVMTQAGV RS+AV
Sbjct:  149 GATSQRAEASTATVEAQVEEDEEEIDETGVEARDIDLVMTQAGVSRSKAV 198

[Close]

BLAST of CF509692 vs. ExPASy Swiss-Prot
Match: NACA4_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.882e-34
Identity = 52/68 (76.47%), Postives = 64/68 (94.12%), Query Frame = 1

Query:  247 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVP 450
            AMLKLGMKP+  VSRVT+K+SKN+LFVISKPDVFKSP S+TY++FGEAKI+D+SSQLQ QAA++FK+P
Sbjct:   74 AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMSSQLQAQAAQRFKMP 141

HSP 2 Score: 51.6026 bits (122), Expect = 3.882e-34
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 3

Query:  501 QDDEEVDETGVEPKDIELVMTQAGVPRSRAV 593
            +DDE+VDETGVE KDI+LVMTQAGV R +AV
Sbjct:  163 EDDEDVDETGVEAKDIDLVMTQAGVSRPKAV 193

[Close]

BLAST of CF509692 vs. ExPASy Swiss-Prot
Match: NACA5_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.662e-32
Identity = 50/74 (67.57%), Postives = 68/74 (91.89%), Query Frame = 1

Query:  247 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPTQVM 468
            A+LKLGMKP+  VSRVT+K++KN+LFVISKPDV+KSP ++TY++FGEAK++DLSSQLQTQAA++FK+P  T ++
Sbjct:   71 AVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEAKVDDLSSQLQTQAAQRFKMPDVTSML 144

HSP 2 Score: 46.2098 bits (108), Expect = 2.662e-32
Identity = 19/31 (61.29%), Postives = 29/31 (93.55%), Query Frame = 3

Query:  501 QDDEEVDETGVEPKDIELVMTQAGVPRSRAV 593
            +D+++VD+TGVE +DI+LVMTQAGV +++AV
Sbjct:  160 EDEDDVDDTGVEARDIDLVMTQAGVSKAKAV 190

[Close]

BLAST of CF509692 vs. ExPASy Swiss-Prot
Match: NACAD_MOUSE (NAC-alpha domain-containing protein 1 OS=Mus musculus GN=Nacad PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.627e-31
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 1

Query:  247 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVP 450
            AM KLG++ I GV+R+T++KSKNILFVI+KPDVFKSP SDTY+VFGEAKIEDLS Q+   AAE+FKVP
Sbjct: 1363 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVP 1430

HSP 2 Score: 50.0618 bits (118), Expect = 3.627e-31
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 3

Query:  477 KPESSAMVQDDEEVDETGVEPKDIELVMTQAGVPRSRAV 593
            +PE     ++DEEV+E G+EP+DIELVM QA V R++AV
Sbjct: 1447 RPECEEQEEEDEEVEEAGLEPRDIELVMAQANVTRAKAV 1485

[Close]

BLAST of CF509692 vs. ExPASy Swiss-Prot
Match: NACA_ORENI (Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.330e-31
Identity = 52/71 (73.24%), Postives = 61/71 (85.92%), Query Frame = 1

Query:  247 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPT 459
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q Q  AAE+FKVP  T
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVPGET 149

HSP 2 Score: 47.7506 bits (112), Expect = 6.330e-31
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 3

Query:  447 PSSYTGNVASKPESSAMVQD--DEEVDETGVEPKDIELVMTQAGVPRSRAV 593
            P     NV    ++  + ++  +EEVDETGVE KDIELVM+QA V R++AV
Sbjct:  146 PGETVSNVQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAV 196

[Close]

BLAST of CF509692 vs. ExPASy Swiss-Prot
Match: NACAM_MOUSE (Nascent polypeptide-associated complex subunit alpha, muscle-specific form OS=Mus musculus GN=Naca PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.453e-29
Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 1

Query:  247 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKV 447
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q Q  AAE+FKV
Sbjct: 2051 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV 2117

HSP 2 Score: 46.595 bits (109), Expect = 1.453e-29
Identity = 22/30 (73.33%), Postives = 27/30 (90.00%), Query Frame = 3

Query:  504 DDEEVDETGVEPKDIELVMTQAGVPRSRAV 593
            ++EEVDETGVE KDIELVM+QA V R++AV
Sbjct: 2139 EEEEVDETGVEVKDIELVMSQANVSRAKAV 2168

[Close]

BLAST of CF509692 vs. ExPASy Swiss-Prot
Match: NACA_XENTR (Nascent polypeptide-associated complex subunit alpha OS=Xenopus tropicalis GN=naca PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.504e-29
Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 1

Query:  247 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKV 447
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q Q  AAE+FKV
Sbjct:   78 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV 144

HSP 2 Score: 46.595 bits (109), Expect = 1.504e-29
Identity = 22/30 (73.33%), Postives = 27/30 (90.00%), Query Frame = 3

Query:  504 DDEEVDETGVEPKDIELVMTQAGVPRSRAV 593
            ++EEVDETGVE KDIELVM+QA V R++AV
Sbjct:  166 EEEEVDETGVEVKDIELVMSQANVSRAKAV 195

The following BLAST results are available for this feature:

BLAST of CF509692 vs. ExPASy Swiss-Prot

BLAST of CF509692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52


Match Name	E-value	Identity	Description
NACA1_ARATH	2.253e-41	83.78	Nascent polypeptide-associated complex subunit alp...	[more]
NACA_PINTA	1.102e-40	91.18	Nascent polypeptide-associated complex subunit alp...	[more]
NACA3_ARATH	7.605e-39	85.14	Nascent polypeptide-associated complex subunit alp...	[more]
NACA2_ARATH	1.249e-35	79.41	Nascent polypeptide-associated complex subunit alp...	[more]
NACA4_ARATH	3.882e-34	76.47	Nascent polypeptide-associated complex subunit alp...	[more]
NACA5_ARATH	2.662e-32	67.57	Nascent polypeptide-associated complex subunit alp...	[more]
NACAD_MOUSE	3.627e-31	73.53	NAC-alpha domain-containing protein 1 OS=Mus muscu...	[more]
NACA_ORENI	6.330e-31	73.24	Nascent polypeptide-associated complex subunit alp...	[more]
NACAM_MOUSE	1.453e-29	74.63	Nascent polypeptide-associated complex subunit alp...	[more]
NACA_XENTR	1.504e-29	74.63	Nascent polypeptide-associated complex subunit alp...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_125000-200 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_C06 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF509692 ID=CF509692; Name=CF509692; organism=Citrus sinensis; type=EST; length=593bp
GCTTCTCGTTCTCAAGTCTCAACACCCAGCCCAAAAAAAATGACTGCTCA
GTCTCAAGAAGAGCTCCTCGCTGCCCATCTTGAAGAGCAAAAGCTCAACC
CCGATGAGCCTGTAGTCGAGGACGACGATGATGAGGATGATGATGAGGAG
GATGAGGATGATGACAAGGATGAAGACGATGTGGAAGGGAAAGGAGATGG
AAGTGGTCGCTCAAAACAGAGCAGGAGTGAAAAGAAGAGTCGGAAAGCAA
TGTTGAAACTTGGAATGAAGCCAATCCCTGGCGTCAGTCGAGTTACAGTT
AAAAAGAGCAAAAATATTTTGTTTGTTATCTCCAAACCAGATGTTTTCAA
GAGTCCTACATCTGACACATACATTGTCTTTGGGGAAGCAAAGATCGAGG
ATCTGAGTTCACAACTGCAAACTCAGGCTGCAGAGCAGTTCAAGGTCCCT
CCTCCTACACAGGTAATGTGGCATCAAAGCCTGAGTCATCGGCCATGGTT
CAAGATGACGAAGAAGTAGATGAGACTGGTGTGGAGCCAAAGGACATTGA
GTTGGTAATGACTCAAGCTGGGGTACCGAGGTCAAGGGCTGTG