CF509693

Overview
NameCF509693
Unique NameCF509693
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509693 vs. ExPASy Swiss-Prot
Match: SYLC_SCHPO (Putative leucyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=SPAC26F1.13c PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.456e-49
Identity = 86/144 (59.72%), Postives = 113/144 (78.47%), Query Frame = 3
Query:   96 GLGLCIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGS--IEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGN 521
            GLG  +PWDPQFLVESL+DSTIYMAYYT+ H+LH  D+YG   G+  I+P QMT EVW+ +F   P P++++I    L R+ +EF+Y+YPFD+R SGKDL+ NHLTFC+Y HTAI  +++WP+G R NGH+++N EKMSKSTGN
Sbjct:  602 GLGTRLPWDPQFLVESLTDSTIYMAYYTICHLLHS-DVYGKVPGALNIKPEQMTPEVWDHVFRQAPKPKNTSISDEALARLCREFQYFYPFDIRASGKDLVPNHLTFCLYTHTAIFDEKYWPKGIRANGHLLMNGEKMSKSTGN 744          
BLAST of CF509693 vs. ExPASy Swiss-Prot
Match: SYLC_NEUCR (Leucyl-tRNA synthetase, cytoplasmic OS=Neurospora crassa GN=leu-6 PE=3 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 1.996e-49
Identity = 86/148 (58.11%), Postives = 107/148 (72.30%), Query Frame = 3
Query:   96 GLGLCIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTG--SIEPGQMTDEVWEFIFCGGPYPE----SSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGN 521
            GLG  +PWDP FLVESLSDST+YMAYYTVAH LH+ D++G   G  +I   QM DEVW++IFC     +     S IP   L+ M++EF+Y+YP D+RVSGKDLI NHLTF +YNH A+  + +WP+  R NGH+ LN EKMSKSTGN
Sbjct:  618 GLGSKLPWDPNFLVESLSDSTVYMAYYTVAHWLHR-DLFGREKGKGNIGADQMIDEVWDYIFCRTELSDHLVTKSGIPKETLDSMRREFQYFYPLDIRVSGKDLIPNHLTFWLYNHIALFPREYWPKSVRANGHLQLNGEKMSKSTGN 764          

HSP 2 Score: 36.1946 bits (82), Expect = 1.996e-49
Identity = 11/26 (42.31%), Postives = 18/26 (69.23%), Query Frame = 1
Query:   10 MNLYHDENRHGFEHTLGWLNQWACLK 87
            +N Y+ + +H F+  +GWL QWAC +
Sbjct:  590 INTYYADTQHAFKGVIGWLKQWACAR 615          
BLAST of CF509693 vs. ExPASy Swiss-Prot
Match: SYLC_DICDI (Leucyl-tRNA synthetase, cytoplasmic OS=Dictyostelium discoideum GN=leuS PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.560e-43
Identity = 83/144 (57.64%), Postives = 102/144 (70.83%), Query Frame = 3
Query:   96 GLGLCIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGS--IEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGN 521
            GLG  +PWD +FL+ESLSDSTIYMA+YTVAH+L +GD+ GS  GS  I P QMT   W+++  G PYPE   +    L  +K+EF YWYP D+RVSG DLIQNHLTF +Y H AI  ++  P+  R NG + LN EKMSKSTGN
Sbjct:  576 GLGTHLPWDEKFLIESLSDSTIYMAFYTVAHLL-QGDVNGSKPGSAGITPKQMTSACWDYVLMGKPYPEGCEVSEEKLKELKKEFTYWYPVDIRVSGADLIQNHLTFFLYTHAAIFEKKFQPKSIRANGFVNLNGEKMSKSTGN 718          
BLAST of CF509693 vs. ExPASy Swiss-Prot
Match: SYLC_MOUSE (Leucyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Lars PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 5.927e-43
Identity = 84/147 (57.14%), Postives = 108/147 (73.47%), Query Frame = 3
Query:   96 GLGLCIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTG--SIEPGQMTDEVWEFIFC-GGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQR--HWPRGFRCNGHIMLNSEKMSKSTGN 521
            GLG  +PWD Q+L+ESLSDSTIYMA+YTVAH+L  GD+ G       I P QMT +VW+++F    P+P++  IP   L+++KQEFE+WYP DLR SGKDLI NHL++ IYNH A+  ++   WP   R NGH++LNSEKMSKSTGN
Sbjct:  580 GLGTRLPWDEQWLIESLSDSTIYMAFYTVAHLLQGGDLNGQAESPLGIRPQQMTKDVWDYVFFKDAPFPKTQ-IPKEKLDQLKQEFEFWYPVDLRASGKDLIPNHLSYYIYNHVAMWPEQSDKWPVSVRANGHLLLNSEKMSKSTGN 725          
BLAST of CF509693 vs. ExPASy Swiss-Prot
Match: SYLC_PONAB (Leucyl-tRNA synthetase, cytoplasmic OS=Pongo abelii GN=LARS PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.724e-42
Identity = 82/147 (55.78%), Postives = 109/147 (74.15%), Query Frame = 3
Query:   96 GLGLCIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTG--SIEPGQMTDEVWEFIFCG-GPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQR--HWPRGFRCNGHIMLNSEKMSKSTGN 521
            GLG  +PWD Q+L+ESLSDSTIYMA+YTVAH+L  G+++G       I P QMT EVW+++F    P+P++  I    L+++KQEFE+WYP DLRVSGKDL+ NHL++ +YNH A+  ++   WP   R NGH++LNSEKMSKSTGN
Sbjct:  578 GLGTHLPWDEQWLIESLSDSTIYMAFYTVAHLLQGGNLHGQAESPLGIRPQQMTKEVWDYVFFKEAPFPKTQ-IAKEKLDQLKQEFEFWYPVDLRVSGKDLVPNHLSYYLYNHVAMWPEQSDKWPTAVRANGHLLLNSEKMSKSTGN 723          
BLAST of CF509693 vs. ExPASy Swiss-Prot
Match: SYLC_HUMAN (Leucyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.724e-42
Identity = 82/147 (55.78%), Postives = 109/147 (74.15%), Query Frame = 3
Query:   96 GLGLCIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTG--SIEPGQMTDEVWEFIFCG-GPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQR--HWPRGFRCNGHIMLNSEKMSKSTGN 521
            GLG  +PWD Q+L+ESLSDSTIYMA+YTVAH+L  G+++G       I P QMT EVW+++F    P+P++  I    L+++KQEFE+WYP DLRVSGKDL+ NHL++ +YNH A+  ++   WP   R NGH++LNSEKMSKSTGN
Sbjct:  578 GLGTHLPWDEQWLIESLSDSTIYMAFYTVAHLLQGGNLHGQAESPLGIRPQQMTKEVWDYVFFKEAPFPKTQ-IAKEKLDQLKQEFEFWYPVDLRVSGKDLVPNHLSYYLYNHVAMWPEQSDKWPTAVRANGHLLLNSEKMSKSTGN 723          
BLAST of CF509693 vs. ExPASy Swiss-Prot
Match: SYLC_YEAST (Leucyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=CDC60 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 5.017e-42
Identity = 80/144 (55.56%), Postives = 107/144 (74.31%), Query Frame = 3
Query:   96 GLGLCIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTG--SIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGN 521
            GLG  +PWD ++LVESLSDSTIY ++YT+AH+L K D YG+  G   I   QMTDEV+++IF      +++NIP   L ++++EFEY+YP D+ +SGKDLI NHLTF IY H A+  ++ WP+G R NGH+MLN+ KMSKSTGN
Sbjct:  594 GLGTRLPWDEKYLVESLSDSTIYQSFYTIAHLLFK-DYYGNEIGPLGISADQMTDEVFDYIFQHQDDVKNTNIPLPALQKLRREFEYFYPLDVSISGKDLIPNHLTFFIYTHVALFPKKFWPKGIRANGHLMLNNSKMSKSTGN 736          
BLAST of CF509693 vs. ExPASy Swiss-Prot
Match: SYLC_CAEEL (Leucyl-tRNA synthetase OS=Caenorhabditis elegans GN=lrs-1 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 2.753e-40
Identity = 81/148 (54.73%), Postives = 102/148 (68.92%), Query Frame = 3
Query:   96 GLGLCIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTG--SIEPGQMTDEVWEFIFCGGPYPESSNIP--SSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAI--MSQRHWPRGFRCNGHIMLNSEKMSKSTGN 521
            GLG  +PWD Q+L+ESLSDSTIY AYYTVAH+L +G   GS  G   I+  QMTD  W ++F G  Y +S  +P     L  +++EF YWYP D+R SGKDLI NHLT+ ++NH AI       WP+G R NGH++LN+EKMSKSTGN
Sbjct:  579 GLGTKLPWDTQYLIESLSDSTIYNAYYTVAHLLQQGAFDGSVVGPAGIKADQMTDASWSYVFLGEIY-DSKTMPVEEEKLKSLRKEFMYWYPIDMRASGKDLIGNHLTYLLFNHAAIWPTDTSKWPKGIRANGHLLLNNEKMSKSTGN 725          
BLAST of CF509693 vs. ExPASy Swiss-Prot
Match: SYL_PYRHO (Leucyl-tRNA synthetase OS=Pyrococcus horikoshii GN=leuS PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.414e-36
Identity = 72/151 (47.68%), Postives = 100/151 (66.23%), Query Frame = 3
Query:   90 RLGLGLCIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGG-------PYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGN 521
            ++GLG  +PWDP++++ESLSDSTIYMAYYT++  ++K        G ++P ++T E +++IF             + + IP+ I++ MK+EFEYWYP D R SGKDLI NHLTF I+NH AI  + HWP+G   NG   L  +KMSKS GN
Sbjct:  511 KIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQ----EGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGN 657          
BLAST of CF509693 vs. ExPASy Swiss-Prot
Match: SYL_PYRAB (Leucyl-tRNA synthetase OS=Pyrococcus abyssi GN=leuS PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.373e-36
Identity = 72/151 (47.68%), Postives = 100/151 (66.23%), Query Frame = 3
Query:   90 RLGLGLCIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPE-------SSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGN 521
            ++GLG  +PWDP++++ESLSDSTIYMAYYT++  +++        G ++P ++T E +++IF      E        + IP+ I++ MK+EFEYWYP D R SGKDLI NHLTF I+NH AI  + HWP+G   NG   L  +KMSKS GN
Sbjct:  511 KVGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINRL----REEGRLDPEKLTPEFFDYIFLEEFSEEREKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGN 657          
The following BLAST results are available for this feature:
BLAST of CF509693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SYLC_SCHPO1.456e-4959.72Putative leucyl-tRNA synthetase, cytoplasmic OS=Sc... [more]
SYLC_NEUCR1.996e-4958.11Leucyl-tRNA synthetase, cytoplasmic OS=Neurospora ... [more]
SYLC_DICDI1.560e-4357.64Leucyl-tRNA synthetase, cytoplasmic OS=Dictyosteli... [more]
SYLC_MOUSE5.927e-4357.14Leucyl-tRNA synthetase, cytoplasmic OS=Mus musculu... [more]
SYLC_PONAB1.724e-4255.78Leucyl-tRNA synthetase, cytoplasmic OS=Pongo abeli... [more]
SYLC_HUMAN1.724e-4255.78Leucyl-tRNA synthetase, cytoplasmic OS=Homo sapien... [more]
SYLC_YEAST5.017e-4255.56Leucyl-tRNA synthetase, cytoplasmic OS=Saccharomyc... [more]
SYLC_CAEEL2.753e-4054.73Leucyl-tRNA synthetase OS=Caenorhabditis elegans G... [more]
SYL_PYRHO1.414e-3647.68Leucyl-tRNA synthetase OS=Pyrococcus horikoshii GN... [more]
SYL_PYRAB5.373e-3647.68Leucyl-tRNA synthetase OS=Pyrococcus abyssi GN=leu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-201 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509693 ID=CF509693; Name=CF509693; organism=Citrus sinensis; type=EST; length=522bp
TTAAATTCCATGAATCTATACCATGATGAGAACCGCCATGGCTTTGAGCA
CACTCTAGGCTGGTTGAATCAGTGGGCTTGCCTCAAGATCGTTTGGGCTT
GGGACTCTGCATTCCCTGGGACCCACAGTTCCTGGTCGAGTCATTATCAG
ATTCAACCATTTATATGGCGTACTACACAGTAGCCCACATGTTACATAAG
GGAGACATGTATGGGAGTACTACTGGTTCAATAGAACCTGGTCAAATGAC
TGATGAGGTCTGGGAATTTATTTTCTGTGGTGGCCCATATCCAGAATCAT
CTAATATCCCATCATCTATCCTTAACAGGATGAAGCAGGAGTTTGAATAT
TGGTATCCATTTGATCTTCGAGTCTCTGGTAAGGACCTCATCCAGAACCA
CTTAACTTTTTGCATTTATAACCACACAGCAATCATGTCCCAGCGCCACT
GGCCTCGTGGATTTAGGTGTAATGGTCACATTATGCTTAATTCTGAGAAG
ATGTCCAAGTCTACCGGGAATT
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