CF509702

Overview
NameCF509702
Unique NameCF509702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2317 contig Csv1_Contig2317:291..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF509702 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 5.304e-61
Identity = 116/182 (63.74%), Postives = 128/182 (70.33%), Query Frame = 3 
Query:  162 MDGGGGYNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWXXXXXXXXXXXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMINELPTIFEGVTGTTKKQAXXXXXXXXXXXXXXXXXXXRGSETQAKFSKAVQSKDE 707
            M+ GG YNPRTVEEVF DFKGRRAGMIKALTT+V+EF+  CDPEKENLCLYG P+E W                  GINFARDGM EKDWLSLVAVHSDAWLL+VAF+FGARFGFDK+DRKRLFNM+N+LPTIFE V GT KKQ                    RGSE++AKFSK     DE
Sbjct:    1 MEAGGAYNPRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSKRGSESRAKFSKPEPKDDE 182
The following BLAST results are available for this feature:
BLAST of CF509702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH5.304e-6163.74PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-210 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509702 ID=CF509702; Name=CF509702; organism=Citrus sinensis; type=EST; length=709bp
CTTCTTTTTGCTCAACAGTGGTCAAACTATTTTCACATCTTTCCCTCCTT
TACTCTTACTCTCTCTCACTCTCGCCAATTTCGAACTTCGATCTCTCTTC
TCTGTAAATCTGAAAACAAACGACGAAAAAGAAAAAGAGTGCGAGAGAAT
TTGATTCGGTGATGGACGGAGGTGGAGGCTACAATCCGCGTACGGTTGAA
GAAGTTTTTGGGGATTTCAAGGGCCGAAGAGCTGGCATGATTAAAGCCCT
TACTACTGAGGTTGAAGAGTTTTACCACCAGTGTGACCCTGAGAAGGAAA
ATCTTTGCCTCTACGGTTTTCCAAGCGAGCAGTGGGAGGTAAACTTACCT
GCTGAAGAAGTGCCTCCAGAGCTTCCAGAGCCTGCATTGGGTATCAACTT
TGCCAGAGATGGGATGCAAGAAAAGGACTGGTTGTCTTTGGTTGCTGTCC
ACAGTGATGCTTGGTTACTCTCCGTGGCCTTTTACTTTGGTGCTAGGTTT
GGTTTTGATAAATCTGATAGGAAACGCCTTTTTAATATGATAAATGAACT
TCCAACAATATTTGAGGGTGTGACAGGGACAACAAAGAAACAGGCAAAAG
AAAAGTCTTCTGTGTCAAATCACAGTAGCAGCAAATCTAAATCAAACTCA
AAGCGAGGCTCTGAAACTCAAGCCAAGTTTTCAAAGGCAGTGCAATCAAA
GGATGAAGA
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