CF509710

Overview
NameCF509710
Unique NameCF509710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length305
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7326 contig Csv1_Contig7326:237..541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509710 vs. ExPASy Swiss-Prot
Match: TRPB1_ARATH (Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana GN=TSB1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.152e-36
Identity = 75/101 (74.26%), Postives = 80/101 (79.21%), Query Frame = 3
Query:    3 QRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 305
            QRPD            VPETLM+ALSELESA + LA D DFQ EL+GIL+DYVGRE+PLYFAERLTEHYRR NG GP IYLKREDLNHTGAHKINNAV QA
Sbjct:   73 QRPDSFGRFGKFGGKYVPETLMHALSELESAFYALATDDDFQRELAGILKDYVGRESPLYFAERLTEHYRRENGEGPLIYLKREDLNHTGAHKINNAVAQA 173          
BLAST of CF509710 vs. ExPASy Swiss-Prot
Match: TRPB2_MAIZE (Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays GN=TSB2 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.339e-35
Identity = 72/101 (71.29%), Postives = 80/101 (79.21%), Query Frame = 3
Query:    3 QRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 305
            QRPD            VPETLM+AL+ELESA H LA D +FQ+EL GIL+DYVGRE+PLYFAERLTEHY+R +G GP IYLKREDLNHTGAHKINNAV QA
Sbjct:   46 QRPDAMGRFGRFGGKYVPETLMHALTELESAFHALATDDEFQKELDGILKDYVGRESPLYFAERLTEHYKRADGTGPLIYLKREDLNHTGAHKINNAVAQA 146          
BLAST of CF509710 vs. ExPASy Swiss-Prot
Match: TRPB_CAMAC (Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.361e-35
Identity = 72/101 (71.29%), Postives = 79/101 (78.22%), Query Frame = 3
Query:    3 QRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 305
            QRPD            VPETLMYAL+ELESA   L+ D+ FQ+EL GIL+DYVGRE+PLYFAERLT HY+RPNG GP IYLKREDLNHTGAHKINNAV QA
Sbjct:   69 QRPDSFGRFGKFGGKYVPETLMYALTELESAFRSLSGDQVFQKELDGILKDYVGRESPLYFAERLTLHYKRPNGEGPEIYLKREDLNHTGAHKINNAVAQA 169          
BLAST of CF509710 vs. ExPASy Swiss-Prot
Match: TRBP2_ARATH (Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 4.361e-35
Identity = 73/101 (72.28%), Postives = 79/101 (78.22%), Query Frame = 3
Query:    3 QRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 305
            QRPD            VPETLM+ALSELE+A + LA D DFQ EL+ IL+DYVGRE+PLYFAERLTEHYRR NG GP IYLKREDLNHTGAHKINNAV QA
Sbjct:   78 QRPDSFGRFGKFGGKYVPETLMHALSELETAFYSLATDEDFQRELAEILKDYVGRESPLYFAERLTEHYRRENGEGPLIYLKREDLNHTGAHKINNAVAQA 178          
BLAST of CF509710 vs. ExPASy Swiss-Prot
Match: TRPB1_MAIZE (Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays GN=TSB1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.094e-33
Identity = 66/85 (77.65%), Postives = 75/85 (88.24%), Query Frame = 3
Query:   51 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 305
            VPETLM+AL+ELE+A H LA D +FQ+EL GIL+DYVGRE+PLYFAERLTEHY+R +G GP IYLKREDLNH GAHKINNAV QA
Sbjct:    8 VPETLMHALTELENAFHALATDDEFQKELDGILKDYVGRESPLYFAERLTEHYKRADGTGPLIYLKREDLNHRGAHKINNAVAQA 92          
BLAST of CF509710 vs. ExPASy Swiss-Prot
Match: TRPB_ANAVT (Tryptophan synthase beta chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpB PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.411e-30
Identity = 65/100 (65.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:    3 QRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 302
            Q PD+           VPETLM AL+ELE+A  K   D  FQ EL  +LRDYVGR TPLYFAERLT HY RP+G G  IYLKREDLNHTGAHKINNA+GQ
Sbjct:   15 QVPDIQGRFGRFGGKYVPETLMPALAELETAYQKYRHDPGFQAELQQLLRDYVGRATPLYFAERLTAHYARPDGTGAQIYLKREDLNHTGAHKINNALGQ 114          
BLAST of CF509710 vs. ExPASy Swiss-Prot
Match: TRPB_TRIEI (Tryptophan synthase beta chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpB PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.229e-29
Identity = 63/101 (62.38%), Postives = 74/101 (73.27%), Query Frame = 3
Query:    3 QRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 305
            Q+PD            VPETLM AL +LE+A  K + D  F++EL  +LRDYVGR +PLYFAERLT HY +P+G GP IYLKREDLNHTGAHKINNA+GQA
Sbjct:   12 QQPDSLGRFGKFGGKYVPETLMPALLQLETACKKYSQDPTFKQELQQLLRDYVGRPSPLYFAERLTAHYTKPDGTGPQIYLKREDLNHTGAHKINNALGQA 112          
BLAST of CF509710 vs. ExPASy Swiss-Prot
Match: TRPB2_ANASP (Tryptophan synthase beta chain 2 OS=Anabaena sp. (strain PCC 7120) GN=trpB2 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.605e-29
Identity = 64/100 (64.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:    3 QRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 302
            Q PD+           VPETLM AL+ELE+A  +  +D  FQ EL  +LRDYVGR TPLYFAERLT HY RP+G G  IYLKREDLNHTGAHKINNA+GQ
Sbjct:   15 QVPDIQGRFGRFGGKYVPETLMPALAELETAYQQYRNDPGFQAELQQLLRDYVGRATPLYFAERLTAHYARPDGTGAQIYLKREDLNHTGAHKINNALGQ 114          
BLAST of CF509710 vs. ExPASy Swiss-Prot
Match: TRPB1_ANASP (Tryptophan synthase beta chain 1 OS=Anabaena sp. (strain PCC 7120) GN=trpB1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.096e-29
Identity = 63/99 (63.64%), Postives = 70/99 (70.71%), Query Frame = 3
Query:    6 RPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 302
            RPD            VPETLM AL ELE+A  K  DD  +Q EL  +LRDYVGR +PLYFAERLTE+Y RP+G G  IYLKREDLNHTGAHKINNA+ Q
Sbjct:   13 RPDALGRFGKFGGKYVPETLMPALGELETAYQKYRDDASYQTELQNLLRDYVGRPSPLYFAERLTEYYARPDGTGAQIYLKREDLNHTGAHKINNALAQ 111          
BLAST of CF509710 vs. ExPASy Swiss-Prot
Match: TRPB_SYNY3 (Tryptophan synthase beta chain OS=Synechocystis sp. (strain PCC 6803) GN=trpB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.670e-29
Identity = 62/100 (62.00%), Postives = 73/100 (73.00%), Query Frame = 3
Query:    3 QRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 302
            Q PD            VPETLM AL+ELE A ++   +  FQEEL+G+L+DYVGR +PLYFAERL+ HY RP+G  P IYLKREDLNHTGAHKINNA+GQ
Sbjct:   13 QYPDALGRFGNYGGKYVPETLMPALTELEEAYYRYRAESSFQEELAGLLKDYVGRSSPLYFAERLSAHYARPDGTYPLIYLKREDLNHTGAHKINNALGQ 112          
The following BLAST results are available for this feature:
BLAST of CF509710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
TRPB1_ARATH5.152e-3674.26Tryptophan synthase beta chain 1, chloroplastic OS... [more]
TRPB2_MAIZE3.339e-3571.29Tryptophan synthase beta chain 2, chloroplastic (F... [more]
TRPB_CAMAC4.361e-3571.29Tryptophan synthase beta chain 2, chloroplastic OS... [more]
TRBP2_ARATH4.361e-3572.28Tryptophan synthase beta chain 2, chloroplastic OS... [more]
TRPB1_MAIZE9.094e-3377.65Tryptophan synthase beta chain 1 (Fragment) OS=Zea... [more]
TRPB_ANAVT9.411e-3065.00Tryptophan synthase beta chain OS=Anabaena variabi... [more]
TRPB_TRIEI1.229e-2962.38Tryptophan synthase beta chain OS=Trichodesmium er... [more]
TRPB2_ANASP1.605e-2964.00Tryptophan synthase beta chain 2 OS=Anabaena sp. (... [more]
TRPB1_ANASP2.096e-2963.64Tryptophan synthase beta chain 1 OS=Anabaena sp. (... [more]
TRPB_SYNY34.670e-2962.00Tryptophan synthase beta chain OS=Synechocystis sp... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-218 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509710 ID=CF509710; Name=CF509710; organism=Citrus sinensis; type=EST; length=305bp
GGCAGAGACCTGATGTGTTTGGCCGGTTCGGTAGGTTCGGCGGGAAGTTC
GTCCCTGAGACGCTAATGTACGCGCTTTCTGAGCTGGAATCCGCACTTCA
TAAACTCGCCGACGACCGAGATTTTCAGGAGGAACTTTCGGGGATTTTGA
GAGACTATGTCGGCAGGGAGACTCCGCTTTATTTTGCTGAGCGGCTTACG
GAGCACTACAGGCGGCCTAACGGGGGAGGGCCTCACATATACCTCAAGAG
GGAGGACCTCAACCACACTGGGGCCCACAAGATCAACAATGCTGTTGGCC
AAGCT
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