CF509720

Overview
NameCF509720
Unique NameCF509720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1604 contig Csv1_Contig1604:128..853. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509720 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.398e-64
Identity = 118/156 (75.64%), Postives = 137/156 (87.82%), Query Frame = 3
Query:  258 YYATPSQSYSGRAPESTRKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAP 725
            Y A PSQSY     ++ ++LERKYSKI D+Y SLEQVT+ALARAGLESSNLIVGIDFTKSNEWTGARSF R+SLH IG   NPYEQAI+IIG+TL++FDEDNLIPC+GFGDASTHDQ+VFSF  +++FCNGFEEVL RY+E+VP L+LAGPTSFAP
Sbjct:   76 YSAPPSQSYGS---DNKKRLERKYSKISDDYSSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRKSLHFIGSSPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFNSEDRFCNGFEEVLSRYKEIVPQLKLAGPTSFAP 228          
BLAST of CF509720 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.483e-62
Identity = 113/156 (72.44%), Postives = 132/156 (84.62%), Query Frame = 3
Query:  258 YYATPSQSYSGRAPESTRKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAP 725
            Y   PSQS         +K +R+YSKI DNY SL QV++AL RAGLESSNLIVGIDFTKSNEWTGA+SF R+SLHH+ +  NPYEQAI+IIG+TL++FDEDNLIPC+GFGDASTHDQ+VFSFYP+ +FCNGFEEVL RYRE+VP L+LAGPTSFAP
Sbjct:  111 YPPPPSQSQVA----DRKKFDRRYSKISDNYSSLLQVSEALGRAGLESSNLIVGIDFTKSNEWTGAKSFNRKSLHHLSNTPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFYPEGRFCNGFEEVLARYREIVPQLKLAGPTSFAP 262          
BLAST of CF509720 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 4.540e-31
Identity = 67/131 (51.15%), Postives = 88/131 (67.18%), Query Frame = 3
Query:  345 NYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGD-DQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSF---YPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAP 725
            ++ +L+ +  A+  AGLE SNLI GID+TKSN + G R+F +R LH I   + NPY+Q I I+GKTLSSFD D  IP +GFGD    D  +F+    Y  EK CNGFEEVLR Y E+ P + ++GPT+F P
Sbjct: 7298 HFKTLDDIVKAIKHAGLEYSNLIFGIDYTKSNFYQGERTFDKRPLHTIDPAEMNPYQQVIQIVGKTLSSFDADGQIPAYGFGDEEFTDHGIFNIAERYDLEKDCNGFEEVLRVYNEVTPTIEMSGPTNFVP 7428          
BLAST of CF509720 vs. ExPASy Swiss-Prot
Match: CPNE1_HUMAN (Copine-1 OS=Homo sapiens GN=CPNE1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12
Identity = 45/158 (28.48%), Postives = 74/158 (46.84%), Query Frame = 3
Query:  270 PSQSYSGRAPESTRKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAP 725
            P +    ++ +++  +  K  +++  Y  L+ V            N  VG+DFT SN    +      SLH++     N Y  A+  +G  +  +D D L P FGFG     D +V      +F P   +C G + ++  YR+ +P +RL GPT+FAP
Sbjct:  246 PEKQQKKKSYKNSGTIRVKICRVETEYSFLDYVMGGC------QINFTVGVDFTGSNGDPSSPD----SLHYLSPTGVNEYLMALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQVSHEFALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNFAP 393          
BLAST of CF509720 vs. ExPASy Swiss-Prot
Match: CPNE3_MOUSE (Copine-3 OS=Mus musculus GN=Cpne3 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12
Identity = 40/113 (35.40%), Postives = 58/113 (51.33%), Query Frame = 3
Query:  405 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAP 725
            N  VG+DFT SN    +      SLH+I  +  N Y  AI  +G  +  +D D + P FGFG       +V      +F P   +CNG + ++  YR  +P +RL GPT+F+P
Sbjct:  291 NFTVGVDFTGSNGDPSSPD----SLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQVPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRTCLPQIRLYGPTNFSP 399          
BLAST of CF509720 vs. ExPASy Swiss-Prot
Match: CPNE1_MOUSE (Copine-1 OS=Mus musculus GN=Cpne1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12
Identity = 49/165 (29.70%), Postives = 75/165 (45.45%), Query Frame = 3
Query:  249 PQQYYATPSQSYSGRAPESTRKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAP 725
            P++     +   SG     T ++E +YS +D                G +  N  VG+DFT SN    +      SLH++     N Y  A+  +G  +  +D D L P FGFG     D +V      +F P   +C G + ++  YR+ +P +RL GPT+FAP
Sbjct:  245 PEKQQRKKNYRNSGTVRVKTCRVETEYSFLD------------YVMGGCQI-NFTVGVDFTGSNGDPSSPD----SLHYLSPTGVNEYLTALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQVSHEFALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNFAP 392          
BLAST of CF509720 vs. ExPASy Swiss-Prot
Match: CPNE3_PONAB (Copine-3 OS=Pongo abelii GN=CPNE3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.052e-11
Identity = 38/113 (33.63%), Postives = 59/113 (52.21%), Query Frame = 3
Query:  405 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAP 725
            N  VG+DFT SN+   +      SLH+I  +  N Y  A+  +G  +  +D D + P FGFG       +V      +F P   +CNG + ++  YR  +P ++L GPT+F+P
Sbjct:  291 NFTVGVDFTGSNDDPRSPD----SLHYISPNGVNEYLTALWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFSP 399          
BLAST of CF509720 vs. ExPASy Swiss-Prot
Match: CPNE2_MOUSE (Copine-2 OS=Mus musculus GN=Cpne2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 39/110 (35.45%), Postives = 55/110 (50.00%), Query Frame = 3
Query:  414 VGIDFTKSNEWTGARSFQRRSLHHIGD-DQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAP 725
            VGIDFT SN           SLH+I     N Y  AI  +G+ +  +D D + P  GFG     D +V      +F P   FC+G + + + Y   +PH+R  GPT+F+P
Sbjct:  310 VGIDFTASN----GNPLDPSSLHYINPMGTNEYLSAIWAVGQIIQDYDSDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNFSP 415          
BLAST of CF509720 vs. ExPASy Swiss-Prot
Match: CPNE2_HUMAN (Copine-2 OS=Homo sapiens GN=CPNE2 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 39/110 (35.45%), Postives = 55/110 (50.00%), Query Frame = 3
Query:  414 VGIDFTKSNEWTGARSFQRRSLHHIGD-DQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAP 725
            VGIDFT SN           SLH+I     N Y  AI  +G+ +  +D D + P  GFG     D +V      +F P   FC+G + + + Y   +PH+R  GPT+F+P
Sbjct:  310 VGIDFTASN----GNPLDPSSLHYINPMGTNEYLSAIWAVGQIIQDYDSDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNFSP 415          
BLAST of CF509720 vs. ExPASy Swiss-Prot
Match: CPNE3_HUMAN (Copine-3 OS=Homo sapiens GN=CPNE3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 38/113 (33.63%), Postives = 58/113 (51.33%), Query Frame = 3
Query:  405 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAP 725
            N  VG+DFT SN    +      SLH+I  +  N Y  A+  +G  +  +D D + P FGFG       +V      +F P   +CNG + ++  YR  +P ++L GPT+F+P
Sbjct:  291 NFTVGVDFTGSNGDPRSPD----SLHYISPNGVNEYLTALWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFSP 399          
The following BLAST results are available for this feature:
BLAST of CF509720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RGLG2_ARATH1.398e-6475.64E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH8.483e-6272.44E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL4.540e-3151.15Copine domain-containing protein 2 OS=Caenorhabdit... [more]
CPNE1_HUMAN2.119e-1228.48Copine-1 OS=Homo sapiens GN=CPNE1 PE=1 SV=1[more]
CPNE3_MOUSE6.165e-1235.40Copine-3 OS=Mus musculus GN=Cpne3 PE=1 SV=2[more]
CPNE1_MOUSE6.165e-1229.70Copine-1 OS=Mus musculus GN=Cpne1 PE=1 SV=1[more]
CPNE3_PONAB1.052e-1133.63Copine-3 OS=Pongo abelii GN=CPNE3 PE=2 SV=1[more]
CPNE2_MOUSE1.373e-1135.45Copine-2 OS=Mus musculus GN=Cpne2 PE=2 SV=1[more]
CPNE2_HUMAN1.373e-1135.45Copine-2 OS=Homo sapiens GN=CPNE2 PE=1 SV=3[more]
CPNE3_HUMAN3.059e-1133.63Copine-3 OS=Homo sapiens GN=CPNE3 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-228 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509720 ID=CF509720; Name=CF509720; organism=Citrus sinensis; type=EST; length=726bp
CTGAATTCTGAACTGACGACACCAACTTCACCGCCATCTTCTTCTTAAGC
CAAGCATAAGAATTGAAGATGTTGCTGAAACTGAACAGTTTTTACTAAGA
ATATCTGTTGGTTATAGAGTTGATGGGTGGGATAATTTCAAAACGGGAAA
GTTCTCGGCAGCCTTCATTTGGGTCTAGTTCATATTCATGGAATCATCAC
AATTATCCGCAGCAGCCACCATATGGTCAACCAAGTCAAGAGTATGCCCC
ACAACAGTATTATGCCACTCCATCTCAAAGCTACAGTGGTCGGGCCCCAG
AGTCGACGAGGAAGTTGGAGAGGAAGTACTCCAAGATAGATGATAACTAT
CATAGCCTGGAGCAGGTTACAGATGCTTTGGCACGTGCTGGGCTAGAGTC
ATCAAATCTCATTGTTGGTATTGATTTCACAAAGAGCAATGAGTGGACAG
GTGCAAGATCATTTCAGCGGAGAAGTCTACATCACATTGGTGATGATCAG
AATCCCTACGAACAAGCAATATCAATTATTGGAAAAACATTGTCTTCCTT
TGATGAGGATAACTTAATTCCATGTTTTGGTTTTGGAGATGCTTCAACAC
ACGATCAAGAAGTGTTCAGTTTTTATCCGGACGAAAAGTTTTGTAATGGA
TTTGAAGAAGTGTTGAGACGATATAGAGAATTGGTCCCTCACCTACGACT
TGCAGGACCAACATCTTTTGCCCCCA
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