CF509738

Overview
NameCF509738
Unique NameCF509738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:248..627. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF509738 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.053e-24
Identity = 59/115 (51.30%), Postives = 72/115 (62.61%), Query Frame = 1 
Query:   34 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVK*GGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGE 378
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K  GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGE
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGE 104
The following BLAST results are available for this feature:
BLAST of CF509738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN2.053e-2451.30Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-246 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509738 ID=CF509738; Name=CF509738; organism=Citrus sinensis; type=EST; length=380bp
TTAGAAACTAGCAGCTAAATTGTAAATTTAAAGATGCTAGAGAAGCTTTG
GGACGATGTTGTGGCAGGGCCTCAGCCTGATCGTGGCCTTGGCAGGCTGA
GGAAAATCACCACAACACCCTTAGCAGTCAAATAGGGTGGTGAGGCGGAG
TCGTCGTCGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGAGTCCAGG
GGCACCGTCGACGCCAGTGACGCCGACGACGCCGCTGTCGGCGCGTAAGG
ACAACGTGTGGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGCTACTAGG
GGTATCGGTGCAGAGGTCTTTGACAAGCCCACACATCCTAACTCTCCCAC
TGTTTATGACTGGCTTTACAGTGGGGAGAC
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