CF509743

Overview
NameCF509743
Unique NameCF509743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig561 contig Csv1_Contig561:62..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509743 vs. ExPASy Swiss-Prot
Match: RETOL_ARATH (Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 5.601e-58
Identity = 107/219 (48.86%), Postives = 154/219 (70.32%), Query Frame = 3
Query:   63 NLFLDCLSMHSDNASS-ISEVIYTKSHSSYSSVLNFSIQNFRFSTPNTPKPQVIVTPSDVSQVQAAIKCSQKHGLEVRIRSGGHDFEGLSFVSEVPFVIIDMLNLSEISVDAEEQTAWVQAGATLGQLYYRIAEKSKNLGFPGGLCPTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDAKGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKVRLV 716
            N FL C S  + +  S I++ ++++++ ++SSVL   I+N RF+T +T KP +I+TP   S V AA+ CS+     ++IRSGGHD++GLS++S+ PF I+DM N+ ++SVD    +AW+ AGATLG++YYRI EKS+  GFP G+CPTV             M+RKFGL+ D + DA ++D  GR LDRK+MGEDLFWAI GGGG S+GV++ +KV+LV
Sbjct:   37 NSFLKCFSDKTKSPQSQITDNVFSQTNPAFSSVLRAYIRNARFNTSSTLKPTIIITPRSESHVSAAVTCSKTLNFLLKIRSGGHDYDGLSYISDKPFFILDMSNIRDVSVDIASNSAWISAGATLGEVYYRIWEKSRVHGFPAGVCPTVGVGGHLSGGGYGNMVRKFGLSVDYVEDAKIVDVNGRVLDRKAMGEDLFWAITGGGGGSYGVVLGYKVKLV 255          
BLAST of CF509743 vs. ExPASy Swiss-Prot
Match: RETO_PAPSO (Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.525e-55
Identity = 103/221 (46.61%), Postives = 146/221 (66.06%), Query Frame = 3
Query:   57 DDNLFLDCLSMHS-DNASSISEVIYTKSHSSYSSVLNFSIQNFRFSTPNTPKPQVIVTPSDVSQVQAAIKCSQKHGLEVRIRSGGHDFEGLSFVSEVPFVIIDMLNLSEISVDAEEQTAWVQAGATLGQLYYRIAEKSKNLGFPGGLCPTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDAKGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKVRLV 716
            +DNL   CL+ H   N +++S    T ++S Y  +L+ S+QN  F+ P   KP  IV P    ++ + + C  +    +R+RSGGH +EGLS+ ++ PFVI+DM+NL+ IS+D   +TAWV++GATLG+LYY IA+ +  LGF  G CPTV            +M RK+GLAADN+VDA LID+ G  LDR+ MG+D+FWAIRGGGG  +G I AWK++L+
Sbjct:   27 NDNLLSSCLNSHGVHNFTTLS----TDTNSDYFKLLHASMQNPLFAKPTVSKPSFIVMPGSKEELSSTVHCCTRESWTIRLRSGGHSYEGLSYTADTPFVIVDMMNLNRISIDVLSETAWVESGATLGELYYAIAQSTDTLGFTAGWCPTVGSGGHISGGGFGMMSRKYGLAADNVVDAILIDSNGAILDREKMGDDVFWAIRGGGGGVWGAIYAWKIKLL 243          
BLAST of CF509743 vs. ExPASy Swiss-Prot
Match: RETO_ESCCA (Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.757e-54
Identity = 105/235 (44.68%), Postives = 145/235 (61.70%), Query Frame = 3
Query:   12 FANIHATSSVLDDHYDDNLFLDCLSMHSDNASSISEVIYTKSHSSYSSVLNFSIQNFRFSTPNTPKPQVIVTPSDVSQVQAAIKCSQKHGLEVRIRSGGHDFEGLSFVSEVPFVIIDMLNLSEISVDAEEQTAWVQAGATLGQLYYRIAEKSKNLGFPGGLCPTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDAKGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKVRLV 716
            F ++    S+L+     N  L CL+    N      V    S S ++  L+ SIQN  F      KP  I+ P    ++   I+C +K    +R+RSGGH +EGLS+ S+ PF++ID++NL+ +S+D E +TAWV++G+TLG+LYY I E S  LGF  G CPTV            +M RK+GLAADN+VDA LIDA G  LDR++MGED+FWAIRGGGG  +G I AWK++L+
Sbjct:    8 FFSLSIFLSLLNCALGGNDLLSCLTF---NGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLL 239          
BLAST of CF509743 vs. ExPASy Swiss-Prot
Match: YVDP_BACSU (Uncharacterized FAD-linked oxidoreductase yvdP OS=Bacillus subtilis GN=yvdP PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 58/163 (35.58%), Postives = 86/163 (52.76%), Query Frame = 3
Query:  210 PQVIVTPSDVSQVQAAIKCSQKHGLEVRIRSGGHDFE-GLSFVSEVPFVIIDMLNLSEISVDAEEQTAWVQAGATLGQLYYRIAEKSKNLGF--PGGLCPTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDAKGRFLDR-KSMGEDLFWAIRGGGGASFG 686
            P V V   +   V  AIK ++++ + +R+RSG H  +  LS VS    ++ID+ +++++ +D E   A VQ G  +G L   +A      GF  P G  PTV            V+ R  GL +DN++    +DAKGR +   +S  EDL WA RGGGG +FG
Sbjct:   33 PLVFVFAQNSYDVSNAIKWARENKVPLRVRSGRHALDKNLSVVSGG--IVIDVSDMNKVFLDEENAIATVQTGIPVGPLVKGLARD----GFMAPFGDSPTVGIGGITMGGGFGVLSRSIGLISDNLLALKTVDAKGRIIHADQSHNEDLLWASRGGGGGNFG 189          
BLAST of CF509743 vs. ExPASy Swiss-Prot
Match: YGAK_BACSU (Uncharacterized FAD-linked oxidoreductase ygaK OS=Bacillus subtilis GN=ygaK PE=3 SV=4)

HSP 1 Score: 77.411 bits (189), Expect = 8.467e-14
Identity = 54/206 (26.21%), Postives = 100/206 (48.54%), Query Frame = 3
Query:  123 IYTKSHSSYSSV---LNFSIQNFRFSTPNTPKPQVIVTPSDVSQVQAAIKCSQKHGLEVRIRSGGHDFEGLSFVSEVPFVIIDMLNLSEISVDAEEQTAWVQAGATLGQLYYRIAEKSKNLGFPGGLCPTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDA---KGRFLDRKSMGE--DLFWAIRGGGGASFGVIVAWKVRLV 716
            I T+    Y+     +N S++ +         P +IV   +      A+K ++++ +  RIR G H +E  S ++    ++ID+  + +I+V+ +++ A+++AGA LG++Y  + +    L  P G    V            ++ R  GL  D++V   +I A   +G  L   S     DLFWA +GGGG +FG++ +   + V
Sbjct:   10 IVTRDDPDYNEARTNINLSLERY---------PDIIVFCQNKQDALNALKWARENRVPFRIRGGRHSYENFSLLNNG--LVIDLSEMKKITVNQDKKLAYIEAGAELGEVYRTLWQYGLTL--PAGTIANVGLTGLTLGGGIGLLTRAAGLTCDSLVQLEMIVADEKEGADLITVSCSNHPDLFWASQGGGGGNFGIVTSMTFKAV 202          
BLAST of CF509743 vs. ExPASy Swiss-Prot
Match: MCRA_STRLA (Mitomycin radical oxidase OS=Streptomyces lavendulae GN=mcrA PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 51/170 (30.00%), Postives = 81/170 (47.65%), Query Frame = 3
Query:  207 KPQVIVTPSDVSQVQAAIKCSQKHGLEVRIRSGGHDFEGLSFVSEVPFVIIDMLNLSEISVDAEEQTAWVQAGATLGQLYYRIAEKSKNLGFPGGLCPTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDAKGRFLD-RKSMGEDLFWAIRGGGGASFGVIVAWKVRL 713
            +P  +V  +D  +V AA++ + +    V + + GH       VS    V+++   +  +SVDA   TAW++AGA   ++    A     L    G  P V            ++ R+FG AAD++    L+ A GR  D       DLFWA+RGG   +FG++V  +V L
Sbjct:   30 RPAYVVEAADEQEVAAAVRLAAEQKRPVGVMATGHG----PSVSADDAVLVNTRRMEGVSVDAARATAWIEAGARWRKVLEHTA--PHGLAPLNGSSPNVGAVGYLVGGGAGLLGRRFGYAADHVRRLRLVTADGRLRDVTAGTDPDLFWAVRGGKD-NFGLVVGMEVDL 192          
BLAST of CF509743 vs. ExPASy Swiss-Prot
Match: HDNO_ARTOX (6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxidans PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 54/201 (26.87%), Postives = 94/201 (46.77%), Query Frame = 3
Query:  117 EVIYTKSHSSYSSVLNFSIQNFRFSTPNTPKPQVIVTPSDVSQVQAAIKCSQKHGLEVRIRSGGHDFEGLSFVSEVPFVIIDMLNLSEISVDAEEQTAWVQAGATLGQLYYRIAEKSK-NLGFPGGLCPTVXXXXXXXXXXXXVMLRKFGLAADNIVDAHLIDAKGRFL-DRKSMGEDLFWAIRGGGGASFGVIVAWKVRL 713
            EVIY    S + ++ N       +   +  +P +I        V  +++ +  +GLE+ +RSGGH+  G  + +    +++D+  ++ I +D     A +  G   G L   + E +K  L    G+ P V             +  K+GLA+DNI+ A L+ A G  +        +LFWA+R G G +FGV+   +V+L
Sbjct:   14 EVIYPDD-SGFDAIANI------WDGRHLQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNG--YATNDGGIVLDLRLMNSIHIDTAGSRARIGGGVISGDL---VKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSDDERPELFWAVR-GAGPNFGVVTEVEVQL 201          
The following BLAST results are available for this feature:
BLAST of CF509743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RETOL_ARATH5.601e-5848.86Reticuline oxidase-like protein OS=Arabidopsis tha... [more]
RETO_PAPSO1.525e-5546.61Reticuline oxidase OS=Papaver somniferum GN=BBE1 P... [more]
RETO_ESCCA3.757e-5444.68Reticuline oxidase OS=Eschscholzia californica GN=... [more]
YVDP_BACSU1.543e-1535.58Uncharacterized FAD-linked oxidoreductase yvdP OS=... [more]
YGAK_BACSU8.467e-1426.21Uncharacterized FAD-linked oxidoreductase ygaK OS=... [more]
MCRA_STRLA4.646e-1230.00Mitomycin radical oxidase OS=Streptomyces lavendul... [more]
HDNO_ARTOX8.761e-1126.876-hydroxy-D-nicotine oxidase OS=Arthrobacter oxida... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-251 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509743 ID=CF509743; Name=CF509743; organism=Citrus sinensis; type=EST; length=720bp
GCTGGGTTACTTTTGCCAACATTCATGCAACTTCTTCAGTGCTTGATGAT
CATTACGATGATAATTTATTTCTTGATTGCCTTTCTATGCACTCTGATAA
CGCCTCCTCCATTTCCGAAGTGATTTACACAAAAAGCCATTCTTCTTATT
CATCCGTCTTGAATTTTTCCATACAAAACTTCAGGTTCTCAACACCCAAC
ACCCCCAAACCTCAAGTCATTGTCACGCCATCAGACGTATCCCAGGTTCA
AGCAGCCATTAAATGTTCTCAAAAGCATGGCTTGGAGGTTAGGATTCGAA
GTGGTGGCCATGACTTTGAGGGTCTATCTTTTGTTTCTGAGGTCCCGTTC
GTCATCATTGATATGCTAAATCTTAGTGAAATCAGTGTTGATGCAGAGGA
GCAAACAGCTTGGGTTCAAGCAGGCGCCACCCTTGGCCAACTTTATTACA
GAATTGCTGAGAAAAGTAAAAATCTTGGCTTTCCAGGCGGACTTTGCCCT
ACTGTTGGGGCTGGTGGACATATTAGTGGTGGAGGATATGGGGTCATGTT
GCGTAAATTTGGCCTTGCTGCCGATAACATCGTTGACGCACACTTGATTG
ACGCCAAAGGTAGATTTCTTGATAGAAAATCAATGGGAGAAGATCTATTT
TGGGCCATTCGAGGTGGTGGAGGAGCTAGCTTTGGCGTGATCGTCGCATG
GAAAGTAAGGCTAGTCACAG
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