CF509753

Overview
NameCF509753
Unique NameCF509753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF509753_ssr63 microsatellite CF509753_ssr63:63..74. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CF509753 vs. ExPASy Swiss-Prot
Match: PP266_ARATH (Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.513e-12
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:  220 GQNRKPLQRGRNL-SIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMI 489
            G+ R PL RG+ L   EA+  +  LKR       LD    +   RLLK DM+AV+ EL RQ    LA+K+FE I+K++WY+P V +Y D+I
Sbjct:   60 GRPRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETALAIKMFEVIQKQEWYQPDVFMYKDLI 150
[Close]
BLAST of CF509753 vs. ExPASy Swiss-Prot
Match: PPR89_ARATH (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.184e-11
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:  256 LSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTN 507
            +S E + A + LKR    S  LD    S   RLLK D+++VL E  RQN   L +K++E +R+E WY+P +  Y DM+ +   N
Sbjct:    1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEVVRREIWYRPDMFFYRDMLMMLARN 84
The following BLAST results are available for this feature:
BLAST of CF509753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PP266_ARATH1.513e-1243.96Pentatricopeptide repeat-containing protein At3g46... [more]
PPR89_ARATH2.184e-1139.29Pentatricopeptide repeat-containing protein At1g62... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-261 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509753 ID=CF509753; Name=CF509753; organism=Citrus sinensis; type=EST; length=531bp
GTTCCTCCATTCAAAATTCAAATCAAAACGCAGCAGGACATTTATTGCAT
CGCTTGGTTGCTCTCGCTCGCTCGCTGTGACAGGAAAGGAATAATGATGA
GTAGTAGTGTGGCCAAATCGGCGTCTTGGAGCGATGTAAAAGTAAAGCCA
TGGCACAACACACAGAAGCAACAAGTGACAGCAACAAGGTCAATGTTAGT
TATAGAAATGAGAGACAGAGGCCAGAACAGGAAGCCTTTACAGCGAGGAA
GAAACCTCAGCATCGAAGCAATCCAAGCTGTCCAACACTTGAAGCGCGCG
CATCTCCATAGTAATCCGCTTGACCATGTCTTCAATTCCAAGTTCAGACG
CTTGTTAAAGTTCGACATGATTGCCGTTCTTCGCGAACTCCTCAGACAAA
ACCATTGTCTCTTGGCGCTTAAGGTGTTTGAAGATATTCGGAAGGAGCAG
TGGTACAAGCCGCAGGTTTCCTTGTATGCTGATATGATTCAGGTATTTGG
CACCAATGGATTGTTCCAACATGTTGAAATT
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