CF509760

Overview
NameCF509760
Unique NameCF509760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2687 contig Csv1_Contig2687:103..502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509760 vs. ExPASy Swiss-Prot
Match: Y1390_ARATH (Uncharacterized protein At1g03900 OS=Arabidopsis thaliana GN=At1g03900 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.155e-11
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 3
Query:  144 ENEETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKG 377
            E EE E  E  L  V E  VY IPPR ++  Y+  EW  +   W G L+VVS  + C I+LED ++G+L+A  F+  G
Sbjct:    5 EEEEEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNSGDLFAACFVDPG 82          
BLAST of CF509760 vs. ExPASy Swiss-Prot
Match: NECP2_RAT (Adaptin ear-binding coat-associated protein 2 OS=Rattus norvegicus GN=Necap2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.970e-11
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 3
Query:  150 EETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARA 362
            EE+E  E VL    E +VY IPPR +   YRA EW +++ +W G L++ +KG+   IKLED+++GEL+A+A
Sbjct:    2 EESE-YESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQA 71          
BLAST of CF509760 vs. ExPASy Swiss-Prot
Match: NECP2_MOUSE (Adaptin ear-binding coat-associated protein 2 OS=Mus musculus GN=Necap2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.970e-11
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 3
Query:  150 EETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARA 362
            EE+E  E VL    E +VY IPPR +   YRA EW +++ +W G L++ +KG+   IKLED+++GEL+A+A
Sbjct:    2 EESE-YESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQA 71          
BLAST of CF509760 vs. ExPASy Swiss-Prot
Match: NECP2_HUMAN (Adaptin ear-binding coat-associated protein 2 OS=Homo sapiens GN=NECAP2 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 30/70 (42.86%), Postives = 46/70 (65.71%), Query Frame = 3
Query:  153 ETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARA 362
            E    E VL    + +VY IPPR +   YRA EW +++ +W G L++ +KG+   IKLED+++GEL+A+A
Sbjct:    2 EESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLEDRTSGELFAQA 71          
BLAST of CF509760 vs. ExPASy Swiss-Prot
Match: NECP2_BOVIN (Adaptin ear-binding coat-associated protein 2 OS=Bos taurus GN=NECAP2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  150 EETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARA 362
            EE E  E VL    + +VY IPPR +   YRA EW +++ +W G L++ +KG+   IKLED+++GEL+A+A
Sbjct:    2 EEAE-YESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSGELFAQA 71          
The following BLAST results are available for this feature:
BLAST of CF509760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y1390_ARATH1.155e-1142.31Uncharacterized protein At1g03900 OS=Arabidopsis t... [more]
NECP2_RAT1.970e-1146.48Adaptin ear-binding coat-associated protein 2 OS=R... [more]
NECP2_MOUSE1.970e-1146.48Adaptin ear-binding coat-associated protein 2 OS=M... [more]
NECP2_HUMAN5.733e-1142.86Adaptin ear-binding coat-associated protein 2 OS=H... [more]
NECP2_BOVIN7.488e-1145.07Adaptin ear-binding coat-associated protein 2 OS=B... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-268 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509760 ID=CF509760; Name=CF509760; organism=Citrus sinensis; type=EST; length=389bp
TGAAAAGTGAAAACTGAAATCCTCTTAATCTGTCTAAAAATTGGAAAAAA
AAAAGTGTATAGATTTTCTCTCTTTAGATCATGATGGCGAAGGAAGAAGA
GAAGAAAGTAAGAGAAATAGAGGATCAAAACGACGTCGAGAGCGAGAACG
AAGAAACTGAAGCTATAGAGTTTGTTCTCTTTCAAGTCTCGGAATGTTAC
GTTTATTTGATACCCCCGAGGAAAAGTGCAGCTTCATACAGGGCTGATGA
ATGGAATGTTAACAAATGGGCATGGGAGGGAATGCTAAAAGTTGTCAGCA
AGGGAGAAGAGTGCATTATCAAACTTGAAGATAAGTCCACAGGTGAGTTA
TATGCTCGGGCATTTTTGAGAAAGGGTGAACTGCATCCA
back to top