CF509823

Overview
NameCF509823
Unique NameCF509823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF509823 vs. ExPASy Swiss-Prot
Match: RING2_ARATH (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.872e-18
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 3 
Query:  141 PSMLVXXXXXXXXXXXXXDWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPNTLIRLWICGYALQCLVHVVLVWMEYR 380
            PSMLV             DW YSKPVV LD +WN AFV+V+ A+L+++ +E PN  +R+WI GY LQC++H+V V +EYR
Sbjct:   49 PSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYR 128
[Close]
BLAST of CF509823 vs. ExPASy Swiss-Prot
Match: RING4_ARATH (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.074e-17
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 3 
Query:  141 PSMLVXXXXXXXXXXXXXDWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPNTLIRLWICGYALQCLVHVVLVWMEYR 380
            PSMLV             DW YSKPVV LDI+WN AFV +  A+LI++ +E+PN  +R+W+ GY +QC +H+  V +EYR
Sbjct:   84 PSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEYR 163
[Close]
BLAST of CF509823 vs. ExPASy Swiss-Prot
Match: RING1_ARATH (E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.074e-17
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 3 
Query:  141 PSMLVXXXXXXXXXXXXXDWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPNTLIRLWICGYALQCLVHVVLVWMEYR 380
            PSMLV             DW YSKPVV LDI+WN AFV V+ A+L+++  E P   +R+W+ GYALQC++H+V V +EYR
Sbjct:   75 PSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYR 154
The following BLAST results are available for this feature:
BLAST of CF509823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RING2_ARATH2.872e-1850.00E3 ubiquitin-protein ligase At1g63170 OS=Arabidops... [more]
RING4_ARATH7.074e-1747.50E3 ubiquitin-protein ligase At4g11680 OS=Arabidops... [more]
RING1_ARATH7.074e-1750.00E3 ubiquitin-protein ligase At1g12760 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-331 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509823 ID=CF509823; Name=CF509823; organism=Citrus sinensis; type=EST; length=380bp
CATCGTCGTCTGATGCCGCGGCGCGGTCCGATTCCCACGCGCCGCTCCTT
CGCCCTCGGGATCCTTCCGTCTCTCCTAACGCCGCCCGTCCCGCTACTCT
TGCTCTTCTCCTCGGCCGCGCCACCGGCCGTGGGCATGGTCCCTCTATGT
TGGTCCGTGAAACTGCCGCGCGTGAGCTCGAAGAGCGACGCGCTGACTGG
GGTTACTCGAAGCCTGTTGTTGCTCTAGACATTATGTGGAACTCTGCCTT
CGTGATTGTTTCGGCCGCGATGTTGATTATTACTATCAATGAGAGACCTA
ATACTCTCATTAGGTTATGGATCTGCGGGTATGCTCTGCAGTGTTTGGTG
CATGTGGTGTTGGTGTGGATGGAGTACAGG
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