CF509824 | Citrus Genome Database

Overview


Name	CF509824
Unique Name	CF509824
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	564

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF509824 vs. ExPASy Swiss-Prot
Match: Y0170_DICDI (Bromodomain-containing protein DDB_G0270170 OS=Dictyostelium discoideum GN=DDB_G0270170 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.790e-16
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 1

Query:   10 LGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 237
            LG+ DY+ +IKHPMDLGT+KA L    Y T  +FAED R+ FSNA  YNP    VHIMA+ L  +FE  + K+  E
Sbjct:  769 LGILDYFDVIKHPMDLGTIKASLIGGGYDTIDKFAEDCRLVFSNAKTYNPSTNPVHIMAQSLEDVFEKGFPKVLIE 844

BLAST of CF509824 vs. ExPASy Swiss-Prot
Match: BRD2_RAT (Bromodomain-containing protein 2 OS=Rattus norvegicus GN=Brd2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.113e-14
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 1

Query:   10 LGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 237
            LGL DY+ IIKHPMDL TVK ++    Y+  +EFA DVR+ FSN   YNP   DV  MA +L  +FE  + K+  E
Sbjct:  380 LGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPDE 455

HSP 2 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 1

Query:   10 LGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 207
            LGL DY+ IIK PMD+GT+K RL  N Y    E  +D    F+N  +YN    D+ +MA+ L KIF
Sbjct:  107 LGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIF 172

BLAST of CF509824 vs. ExPASy Swiss-Prot
Match: BRD2_MOUSE (Bromodomain-containing protein 2 OS=Mus musculus GN=Brd2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.113e-14
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 1

Query:   10 LGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 237
            LGL DY+ IIKHPMDL TVK ++    Y+  +EFA DVR+ FSN   YNP   DV  MA +L  +FE  + K+  E
Sbjct:  380 LGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPDE 455

HSP 2 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 1

Query:   10 LGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 207
            LGL DY+ IIK PMD+GT+K RL  N Y    E  +D    F+N  +YN    D+ +MA+ L KIF
Sbjct:  107 LGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIF 172

BLAST of CF509824 vs. ExPASy Swiss-Prot
Match: BRD2_HUMAN (Bromodomain-containing protein 2 OS=Homo sapiens GN=BRD2 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.113e-14
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 1

Query:   10 LGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 237
            LGL DY+ IIKHPMDL TVK ++    Y+  +EFA DVR+ FSN   YNP   DV  MA +L  +FE  + K+  E
Sbjct:  381 LGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPDE 456

HSP 2 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 1

Query:   10 LGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 207
            LGL DY+ IIK PMD+GT+K RL  N Y    E  +D    F+N  +YN    D+ +MA+ L KIF
Sbjct:  108 LGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIF 173

BLAST of CF509824 vs. ExPASy Swiss-Prot
Match: BRD2_CANFA (Bromodomain-containing protein 2 OS=Canis familiaris GN=BRD2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.113e-14
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 1

Query:   10 LGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 237
            LGL DY+ IIKHPMDL TVK ++    Y+  +EFA DVR+ FSN   YNP   DV  MA +L  +FE  + K+  E
Sbjct:  381 LGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPDE 456

HSP 2 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 1

Query:   10 LGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 207
            LGL DY+ IIK PMD+GT+K RL  N Y    E  +D    F+N  +YN    D+ +MA+ L KIF
Sbjct:  108 LGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIF 173

BLAST of CF509824 vs. ExPASy Swiss-Prot
Match: BRD2_BOVIN (Bromodomain-containing protein 2 OS=Bos taurus GN=BRD2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.113e-14
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 1

Query:   10 LGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 237
            LGL DY+ IIKHPMDL TVK ++    Y+  +EFA DVR+ FSN   YNP   DV  MA +L  +FE  + K+  E
Sbjct:  381 LGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPDE 456

HSP 2 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 1

Query:   10 LGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 207
            LGL DY+ IIK PMD+GT+K RL  N Y    E  +D    F+N  +YN    D+ +MA+ L KIF
Sbjct:  108 LGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIF 173

BLAST of CF509824 vs. ExPASy Swiss-Prot
Match: YCK2_SCHPO (Bromodomain-containing protein C1450.02 OS=Schizosaccharomyces pombe GN=SPCC1450.02 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.563e-13
Identity = 29/67 (43.28%), Postives = 45/67 (67.16%), Query Frame = 1

Query:   22 DYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWK 222
            DY+ +IK PMDL T++++L+KN Y T  EF  D+ + F+N   YNP G  VH+M  +L  +F++ W+
Sbjct:  292 DYFDVIKEPMDLSTIQSKLNKNEYSTLEEFESDILLMFNNCFTYNPPGTPVHVMGRQLENVFKEKWE 358

BLAST of CF509824 vs. ExPASy Swiss-Prot
Match: BRDT_MACFA (Bromodomain testis-specific protein OS=Macaca fascicularis GN=BRDT PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.041e-13
Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 1

Query:    1 VKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 237
            V  LGL +YY I+K+PMDLGT+K ++    YK   +FA DVR+ F N   YNP   +V  MA  L  +FE  + KI  E
Sbjct:  301 VNALGLHNYYDIVKNPMDLGTIKEKMDNQEYKDAYKFAADVRLMFMNCYKYNPPDHEVVTMARRLQDVFETHFSKIPVE 379

HSP 2 Score: 69.707 bits (169), Expect = 1.120e-11
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 1

Query:   10 LGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 207
            L L DYYTIIK+PMDL T+K RL    Y    E  ED    FSN  LYN  G D+ +MA+ L K+F
Sbjct:   61 LKLPDYYTIIKNPMDLNTIKKRLENKYYVKASECIEDFNTMFSNCYLYNKPGDDIVLMAQALEKLF 126

BLAST of CF509824 vs. ExPASy Swiss-Prot
Match: BRD4_MOUSE (Bromodomain-containing protein 4 OS=Mus musculus GN=Brd4 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.041e-13
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 1

Query:    1 VKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 237
            V+ LGL DY  IIKHPMD+ T+K++L    Y+  +EF  DVR+ FSN   YNP   +V  MA +L  +FE  + K+  E
Sbjct:  383 VEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 461

HSP 2 Score: 69.707 bits (169), Expect = 1.120e-11
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1

Query:   10 LGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 207
            L L DYY IIK PMD+GT+K RL  N Y   +E  +D    F+N  +YN  G D+ +MAE L K+F
Sbjct:   92 LNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLF 157

BLAST of CF509824 vs. ExPASy Swiss-Prot
Match: BRD4_HUMAN (Bromodomain-containing protein 4 OS=Homo sapiens GN=BRD4 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.666e-13
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 1

Query:    1 VKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 237
            V+ LGL DY  IIKHPMD+ T+K++L    Y+  +EF  DVR+ FSN   YNP   +V  MA +L  +FE  + K+  E
Sbjct:  382 VEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 460

HSP 2 Score: 69.707 bits (169), Expect = 1.120e-11
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1

Query:   10 LGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 207
            L L DYY IIK PMD+GT+K RL  N Y   +E  +D    F+N  +YN  G D+ +MAE L K+F
Sbjct:   92 LNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLF 157

The following BLAST results are available for this feature:

BLAST of CF509824 vs. ExPASy Swiss-Prot

BLAST of CF509824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18


Match Name	E-value	Identity	Description
Y0170_DICDI	9.790e-16	52.63	Bromodomain-containing protein DDB_G0270170 OS=Dic...	[more]
BRD2_RAT	4.113e-14	50.00	Bromodomain-containing protein 2 OS=Rattus norvegi...	[more]
BRD2_MOUSE	4.113e-14	50.00	Bromodomain-containing protein 2 OS=Mus musculus G...	[more]
BRD2_HUMAN	4.113e-14	50.00	Bromodomain-containing protein 2 OS=Homo sapiens G...	[more]
BRD2_CANFA	4.113e-14	50.00	Bromodomain-containing protein 2 OS=Canis familiar...	[more]
BRD2_BOVIN	4.113e-14	50.00	Bromodomain-containing protein 2 OS=Bos taurus GN=...	[more]
YCK2_SCHPO	1.563e-13	43.28	Bromodomain-containing protein C1450.02 OS=Schizos...	[more]
BRDT_MACFA	2.041e-13	45.57	Bromodomain testis-specific protein OS=Macaca fasc...	[more]
BRD4_MOUSE	2.041e-13	45.57	Bromodomain-containing protein 4 OS=Mus musculus G...	[more]
BRD4_HUMAN	2.666e-13	45.57	Bromodomain-containing protein 4 OS=Homo sapiens G...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_125000-332 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_H05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF509824 ID=CF509824; Name=CF509824; organism=Citrus sinensis; type=EST; length=564bp
GTGAAGGGGCTTGGCCTAAAAGATTATTATACAATAATTAAGCATCCAAT
GGATCTGGGTACGGTCAAGGCTAGGTTGAGTAAAAATTTGTACAAAACTC
CTAGAGAGTTTGCGGAGGATGTGAGGATTACGTTTAGTAATGCCATGTTG
TATAACCCAAAAGGGCAGGATGTGCATATTATGGCTGAGGAGTTGTCAAA
GATATTTGAAGATACATGGAAAAAAATAGAGGCAGAGTATAATTTCAGTA
GGCAGTCGAAAATGGGTCGCAAGTCTGATTTTGCAACACCCATACCGAAA
ACTGTTCCTGCTCCTCCTCCACCAGTTCATACCCCTACACTTGCCCCTCC
TTTGCCAGTTCATTCTCCTACTTCTGCACATCCTGTGCCAGTTCATACTC
CTACACCAGTTCATACTCCACCTCCACCTTCAGGGCCTTTAGAAGCAAGG
ACTTTGGAGAGAGTAGATTCTGTGCCAATTCCTGATGATTTGAAAAGAAA
AGCTACTGATTTGGCTCATCAGGATACGATACTGGTTCCAAGAAACCTAA
GGCGAACAACCCTG