CF509826

Overview
NameCF509826
Unique NameCF509826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length263
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509826 vs. ExPASy Swiss-Prot
Match: GH36_ARATH (Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.088e-33
Identity = 67/87 (77.01%), Postives = 79/87 (90.80%), Query Frame = 1
Query:    1 ILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIITGTIDSQITDPSVRDAVMKILKPNPKLAGFIEN 261
            ILC DSYQSMYSQ+LCGLCQ+KEVLRVGAVFASGFIRAI+FLEKHWP + +DI TGT+ S+ITD SVR+AV +ILKP+PKLA F+E+
Sbjct:  202 ILCSDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIKFLEKHWPELARDIRTGTLSSEITDSSVREAVGEILKPDPKLADFVES 288          
BLAST of CF509826 vs. ExPASy Swiss-Prot
Match: GH35_ARATH (Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.420e-33
Identity = 68/86 (79.07%), Postives = 78/86 (90.70%), Query Frame = 1
Query:    1 ILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIITGTIDSQITDPSVRDAVMKILKPNPKLAGFIE 258
            ILC DSYQSMYSQ+LCGLCQ++EVLRVGAVFASGFIRAI+FLEKHW  +V+DI TGT+ S ITDPSVR+AV KILKP+PKLA F+E
Sbjct:  202 ILCSDSYQSMYSQMLCGLCQHQEVLRVGAVFASGFIRAIKFLEKHWIELVRDIRTGTLSSLITDPSVREAVAKILKPSPKLADFVE 287          
BLAST of CF509826 vs. ExPASy Swiss-Prot
Match: GH31_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Oryza sativa subsp. japonica GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.142e-25
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 1
Query:    1 ILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIITGTIDSQITDPSVRDAVMKILKPNPKLAGFIEN 261
            ILC DSYQSMY+QLLCGL    +VLRVGAVFASGF+RAI FLEKHW  +  DI TG +D +ITD  VRDAV ++L+ +P LA  IE+
Sbjct:  202 ILCVDSYQSMYAQLLCGLVHRADVLRVGAVFASGFLRAIHFLEKHWARLCHDIRTGELDPEITDRVVRDAVGRVLRADPALADAIED 288          
BLAST of CF509826 vs. ExPASy Swiss-Prot
Match: GH31_ARATH (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.065e-25
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 ILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIITGTIDSQITDPSVRDAVMKILKPNPKLAGFI 255
            ILCPDS+QSMY+Q+LCGL     VLRVGAVFASG +RAIRFL+ HW     DI  G +DS+ITDPS+R  +  ILKP+P LA FI
Sbjct:  200 ILCPDSFQSMYTQMLCGLLDRLSVLRVGAVFASGLLRAIRFLQLHWSRFAHDIELGCLDSEITDPSIRQCMSGILKPDPVLAEFI 284          
BLAST of CF509826 vs. ExPASy Swiss-Prot
Match: GH34_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.4 OS=Oryza sativa subsp. japonica GN=GH3.4 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.056e-24
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    1 ILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIITGTIDSQITDPSVRDAVMKILK-PNPKLAGFIE 258
            +LC D+YQSMY+QL+CGL    +VLRVGAVFASGF+RAIRFLEKHWP + +DI  G +D  +TDP+VR AV ++L+  +P LA  IE
Sbjct:  206 VLCEDAYQSMYAQLICGLVHRADVLRVGAVFASGFLRAIRFLEKHWPSLCRDIRAGELDGGVTDPAVRGAVGRVLRGADPALADAIE 292          
BLAST of CF509826 vs. ExPASy Swiss-Prot
Match: GH32_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.2 OS=Oryza sativa subsp. japonica GN=GH3.2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.332e-23
Identity = 51/87 (58.62%), Postives = 69/87 (79.31%), Query Frame = 1
Query:    1 ILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIITGTIDSQITDPSVRDAVMKIL-KPNPKLAGFIE 258
            ILC D++QSMY+Q+LCGL    EVLRVGAVFASG +RAIRFL+ HW  +  DI TGT+ +++T+PS+RDAV ++L  P+ +LA F+E
Sbjct:  210 ILCTDAFQSMYAQMLCGLVARAEVLRVGAVFASGLLRAIRFLQLHWRELAHDIRTGTLSAKVTEPSIRDAVAEVLAAPDAELAAFVE 296          
BLAST of CF509826 vs. ExPASy Swiss-Prot
Match: GH38_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.968e-23
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 1
Query:    1 ILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIITGTIDSQITDPSVRDAVMKILKPNPKLAGFI 255
            ILC D++QSMY+Q++CGLCQ  +VLR+GAVFASG +RAIRFL+ +W  +  DI +G +  ++TDPSVR+AV  IL P+P+LA  I
Sbjct:  207 ILCADAFQSMYAQMVCGLCQRNDVLRLGAVFASGLLRAIRFLQLNWEQLADDIESGELTPRVTDPSVREAVAAILLPDPELAKLI 291          
BLAST of CF509826 vs. ExPASy Swiss-Prot
Match: GH38_ORYSI (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.968e-23
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 1
Query:    1 ILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIITGTIDSQITDPSVRDAVMKILKPNPKLAGFI 255
            ILC D++QSMY+Q++CGLCQ  +VLR+GAVFASG +RAIRFL+ +W  +  DI +G +  ++TDPSVR+AV  IL P+P+LA  I
Sbjct:  207 ILCADAFQSMYAQMVCGLCQRNDVLRLGAVFASGLLRAIRFLQLNWEQLADDIESGELTPRVTDPSVREAVAAILLPDPELAKLI 291          
BLAST of CF509826 vs. ExPASy Swiss-Prot
Match: GH33_ARATH (Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.286e-22
Identity = 50/86 (58.14%), Postives = 68/86 (79.07%), Query Frame = 1
Query:    1 ILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIITGTIDSQITDPSVRDAVMKIL-KPNPKLAGFI 255
            ILCPDS QSMY+Q+LCGL    EVLR+GAVFASG +RAI FL+ +W  +  DI TGT+ S+I+DP++++++ KIL KP+ +LA FI
Sbjct:  200 ILCPDSSQSMYTQMLCGLLMRHEVLRLGAVFASGLLRAIGFLQTNWKELADDISTGTLSSRISDPAIKESMSKILTKPDQELADFI 285          
BLAST of CF509826 vs. ExPASy Swiss-Prot
Match: GH317_ARATH (Indole-3-acetic acid-amido synthetase GH3.17 OS=Arabidopsis thaliana GN=GH3.17 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.629e-21
Identity = 54/88 (61.36%), Postives = 64/88 (72.73%), Query Frame = 1
Query:    1 ILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIITGTIDSQITDPSVRDAVMKILK-PNPKLAGFIEN 261
            ILC DS QSMY QLLCGL Q   VLRVGAVFAS F+RA++FLE H+  +  DI TGT+ S ITD S RD+V+ IL  PN +LA  IE+
Sbjct:  192 ILCQDSKQSMYCQLLCGLVQRSHVLRVGAVFASAFLRAVKFLEDHYKELCADIRTGTVTSWITDSSCRDSVLSILNGPNQELADEIES 279          
The following BLAST results are available for this feature:
BLAST of CF509826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
GH36_ARATH1.088e-3377.01Indole-3-acetic acid-amido synthetase GH3.6 OS=Ara... [more]
GH35_ARATH1.420e-3379.07Indole-3-acetic acid-amido synthetase GH3.5 OS=Ara... [more]
GH31_ORYSJ4.142e-2564.37Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH31_ARATH7.065e-2563.53Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH34_ORYSJ2.056e-2460.92Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH32_ORYSJ1.332e-2358.62Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH38_ORYSJ2.968e-2357.65Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH38_ORYSI2.968e-2357.65Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH33_ARATH4.286e-2258.14Indole-3-acetic acid-amido synthetase GH3.3 OS=Ara... [more]
GH317_ARATH1.629e-2161.36Indole-3-acetic acid-amido synthetase GH3.17 OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-334 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509826 ID=CF509826; Name=CF509826; organism=Citrus sinensis; type=EST; length=263bp
ATTTTGTGCCCTGATTCTTACCAAAGCATGTACTCTCAATTGCTTTGTGG
CCTTTGCCAAAACAAAGAAGTCCTCAGGGTTGGTGCCGTTTTTGCCTCTG
GTTTCATTAGAGCTATTAGGTTTCTTGAGAAACATTGGCCTCTTGTCGTT
AAAGATATTATAACTGGCACCATTGACTCCCAAATTACTGACCCATCTGT
TAGGGATGCTGTCATGAAGATCCTTAAACCAAACCCAAAACTTGCTGGTT
TTATTGAAAATGA
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