CF509830

Overview
NameCF509830
Unique NameCF509830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11546 contig Csv1_Contig11546:80..499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF509830 vs. ExPASy Swiss-Prot
Match: PLA23_ORYSJ (Phospholipase A2 homolog 3 OS=Oryza sativa subsp. japonica GN=PLA2-III PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.069e-25
Identity = 60/125 (48.00%), Postives = 69/125 (55.20%), Query Frame = 2 
Query:   44 AIAHVFIFLILSVSVHALNIGVQSAYSAISVVXXXXXXXXXXXXXXXXXXXXITACFHVLQSKDCSRKCESDFCSVPPFLRYGKYCGLLYSGCPGEKPCDGLDACCMKHDACVQAKNNDYLSQEC 418
            A A + +F +++    ALNIG+QSA    S                                  CSR CESD C+ PP LRYGKYCG+LYSGCPGE+PCD LDACCM HD CVQAK NDYLS  C
Sbjct:   21 AAAALLLFAVVAPPAAALNIGLQSAGDGASKAGL------------------------------CSRTCESDHCTTPPLLRYGKYCGILYSGCPGEQPCDELDACCMHHDNCVQAK-NDYLSTAC 114
[Close]
BLAST of CF509830 vs. ExPASy Swiss-Prot
Match: PLA22_ORYSJ (Probable phospholipase A2 homolog 2 OS=Oryza sativa subsp. japonica GN=PLA2-II PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.439e-24
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 2 
Query:  224 QSKDCSRKCESDFCSVPPFLRYGKYCGLLYSGCPGEKPCDGLDACCMKHDACVQAKNNDYLSQEC 418
            + + CSR CES FC++ P LRYGKYCG+LYSGCPGE+PCD LDACCM HD CV   N+DYL+  C
Sbjct:   38 KDQGCSRTCESQFCTIAPLLRYGKYCGILYSGCPGERPCDALDACCMVHDHCVDTHNDDYLNTMC 102
[Close]
BLAST of CF509830 vs. ExPASy Swiss-Prot
Match: PLA21_ORYSJ (Probable phospholipase A2 homolog 1 OS=Oryza sativa subsp. japonica GN=PLA2-I PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.786e-12
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 2 
Query:  236 CSRKCESDFCSVPPFLRYGKYCGLLYSGCPGEKPCDGLDACCMKHDACVQAK 391
            CSR C +  C     +RYGKYCG+ +SGC GE+PCD LDACC  HD CV  K
Sbjct:   29 CSRSCAALNCDSVG-IRYGKYCGVGWSGCDGEEPCDDLDACCRDHDHCVDKK 79
The following BLAST results are available for this feature:
BLAST of CF509830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PLA23_ORYSJ1.069e-2548.00Phospholipase A2 homolog 3 OS=Oryza sativa subsp. ... [more]
PLA22_ORYSJ3.439e-2466.15Probable phospholipase A2 homolog 2 OS=Oryza sativ... [more]
PLA21_ORYSJ8.786e-1257.69Probable phospholipase A2 homolog 1 OS=Oryza sativ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-338 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509830 ID=CF509830; Name=CF509830; organism=Citrus sinensis; type=EST; length=420bp
ATTTTAACAAATGGTGATGACACACCAACATTCTTTGAAGTTGGCCATAG
CCCATGTTTTCATTTTTCTAATCCTTTCAGTTTCTGTTCATGCTCTCAAC
ATTGGAGTTCAATCAGCATATTCTGCCATCTCTGTGGTTTTTTATTTGTT
TTTACTTAAATTTTTTCTTTTATTTTAAAACCAATTTCAGTTTACATTAA
TAACTGCATGTTTTCACGTCTTGCAGAGCAAAGATTGCAGCAGAAAATGT
GAATCTGACTTCTGTTCAGTGCCCCCATTTCTGAGATATGGCAAGTACTG
TGGGCTGCTGTACAGTGGATGCCCTGGAGAGAAGCCTTGTGATGGCCTTG
ATGCTTGCTGTATGAAGCATGATGCCTGCGTCCAAGCCAAGAACAATGAC
TATTTGAGCCAAGAATGCAG
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