CF509831

Overview
NameCF509831
Unique NameCF509831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF509831_ssr173 microsatellite CF509831_ssr173:173..187. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2487 contig Csv1_Contig2487:197..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF509831 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.904e-19
Identity = 66/197 (33.50%), Postives = 83/197 (42.13%), Query Frame = 1 
Query:   25 EKKKFTTMALEALNSPTTSTHNHHPFRYEDSWTKRRRSKRPRTDESPQLXXXXXXXTEEEYMALCLIMLARGTTTANTAPAERTPTLAPEQKPLDQFPEPPSLKLSYKCSVCNKAFSSYQALGGHKASHR------------KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHECSICHKSFPTGQALGGHKR 579
            E+ +    A  A++S T+   + H  +    W KR+RS+R R+              EEE +ALCL+ML+RG      AP              + F  P  +   +KCSVC K+FSSYQALGGHK SHR                                              H CSIC K FPTGQALGGHKR
Sbjct:   15 EQHQLDVEAAAAVSSATSGEESGHVLQ---GWAKRKRSRRQRS--------------EEENLALCLLMLSRGGKQRVQAPQP------------ESFAAP--VPAEFKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKR 180
The following BLAST results are available for this feature:
BLAST of CF509831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT9.904e-1933.50Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-339 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509831 ID=CF509831; Name=CF509831; organism=Citrus sinensis; type=EST; length=581bp
CAAGAGTCGAGAATTCACTAACAAGAAAAGAAAAAATTCACGACTATGGC
TCTAGAAGCTCTAAACTCCCCTACAACAAGCACCCACAATCATCATCCGT
TTAGATACGAAGACTCATGGACTAAAAGAAGGCGCTCAAAACGACCCCGT
ACCGACGAGTCCCCACAACTACCAGCAGCAGCAGCAGCTCCCACGGAAGA
AGAGTACATGGCTCTCTGTCTCATCATGCTCGCCCGCGGTACCACCACCG
CCAACACCGCTCCGGCCGAAAGAACCCCAACCCTGGCGCCGGAACAGAAG
CCGCTGGATCAGTTCCCGGAGCCGCCAAGTTTGAAACTCTCTTACAAGTG
CAGTGTGTGCAACAAGGCTTTCTCTTCGTACCAGGCCCTTGGTGGGCACA
AAGCCAGCCACCGCAAGAACGCTGCTGACGCCTCGGCTTCTCCCAACGCC
GCAGCCGCCAGTGACGTCACCCCACCACCGTCGGCAACGGCGAGCAGCGG
AAGCGGTGGTAGGACCCACGAGTGCTCTATTTGTCACAAGTCTTTTCCCA
CGGGACAAGCTCTAGGAGGCCACAAGCGGTG
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