CF509832

Overview
NameCF509832
Unique NameCF509832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3658 contig Csv1_Contig3658:165..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509832 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.341e-25
Identity = 59/194 (30.41%), Postives = 98/194 (50.52%), Query Frame = 2
Query:    8 LVLLAGYMKNATVAISAFSICLNVSAFQLMIFLGFLGASCVRVSNELGRGNAKATKFSIKVILTISACLGVICWILCLIFGRQISYLFTTSEEIAEEXXXXXXXXXXXXXXXXXQPVLSGVAVGAGMQSTVAFVNLGSYYFVGVPTGVLLAYVANXXXXXXXXXXXXXXXXQTIILSFIIWRTDWDDQVNKASQ 589
            LV+++G + N T+++ A SIC+    + +   LG   A  VRVSNELG GN +    S+ V+   +  +  +  ++ L+F   +S  FT+  E+                    QP+LSGVA+G+G Q+ VA+VNL +YY +G+P G +L +  +                QT+ L  +  +T+W  +V  A+Q
Sbjct:  297 LVIISGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVNITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKTNWTSEVENAAQ 490          
BLAST of CF509832 vs. ExPASy Swiss-Prot
Match: S47A1_DANRE (Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.887e-15
Identity = 51/178 (28.65%), Postives = 72/178 (40.45%), Query Frame = 2
Query:   50 ISAFSICLNVSAFQLMIFLGFLGASCVRVSNELGRGNAKATKFSIKVILTISACLGVICWILCLIFGRQISYLFTTSEEIAEEXXXXXXXXXXXXXXXXXQPVLSGVAVGAGMQSTVAFVNLGSYYFVGVPTGVLLAYVANXXXXXXXXXXXXXXXXQTIILSFIIWRTDWDDQVNKA 583
            + A S+   ++    M  LGF  A+ VRV N LG GN +  K S KV L     +  +   L       I+Y+FTT EEI                      +  G+  GAG Q   A  N+  YYFVG PTGV L +  +                Q++    +I++ DW     +A
Sbjct:  310 LGAQSVVYELATIAYMFPLGFAVAASVRVGNALGAGNTERAKLSAKVALVCGVLVSCVVATLIGCTKDVIAYIFTTEEEIVSRVSQVMIMYGFFHLFDAIAGITGGIVRGAGKQLLGALCNIVGYYFVGFPTGVSLMFALSMGIIGLWIGFFGCVFLQSLFFIILIYKLDWKKATQEA 487          
The following BLAST results are available for this feature:
BLAST of CF509832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TT12_ARATH7.341e-2530.41Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
S47A1_DANRE6.887e-1528.65Multidrug and toxin extrusion protein 1 OS=Danio r... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-340 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509832 ID=CF509832; Name=CF509832; organism=Citrus sinensis; type=EST; length=590bp
TTCCATTCTAGTCTTATTGGCTGGGTACATGAAAAATGCAACCGTTGCCA
TATCTGCTTTCTCTATTTGCCTCAATGTCAGTGCATTTCAATTAATGATC
TTCCTTGGCTTCCTTGGTGCCTCATGCGTGCGAGTGTCGAATGAACTCGG
GAGAGGAAATGCGAAAGCCACAAAATTTTCCATTAAAGTCATACTCACTA
TTTCAGCCTGTCTTGGAGTGATCTGTTGGATTTTATGTTTAATCTTTGGC
CGTCAGATTTCATACCTGTTTACAACTAGTGAGGAAATTGCAGAAGAAGT
ATCGAAACTATCTGTTCTGCTTTCTTTCTCCCTTTTGCTTAACAGCGTTC
AGCCAGTACTCTCAGGGGTAGCTGTAGGTGCTGGAATGCAAAGCACGGTT
GCATTTGTTAACTTGGGAAGCTATTACTTTGTTGGAGTTCCTACAGGAGT
TTTGCTTGCATATGTGGCCAATCTCGGAGTTACGGGTTTATGGATTGGAT
TGTTGGGTGGAATTGTTATTCAAACCATTATTCTTTCCTTCATCATATGG
AGGACCGATTGGGATGATCAGGTGAACAAGGCATCCCAAC
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