CF509834

Overview
NameCF509834
Unique NameCF509834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:79..638. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509834 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 8.108e-42
Identity = 66/118 (55.93%), Postives = 88/118 (74.58%), Query Frame = 1
Query:  133 KIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTW 483
            KIISR MF+ +L +RN+  CPA+GFYTYDAF+ AA++FP FG +G+  +RKRE+AAF  QT HETTGGW  AP G YAWGYC++++ +P+S+           PG+ YYGRGP+QL+W
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSW 121          

HSP 2 Score: 38.891 bits (89), Expect = 8.108e-42
Identity = 18/25 (72.00%), Postives = 20/25 (80.00%), Query Frame = 2
Query:  485 NCNYLRCGEALGVDLLNNPDLLATD 559
            N NY  CGEAL V+LL NPDL+ATD
Sbjct:  122 NYNYGPCGEALRVNLLGNPDLVATD 146          
BLAST of CF509834 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.232e-39
Identity = 74/132 (56.06%), Postives = 88/132 (66.67%), Query Frame = 1
Query:   88 GERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTW 483
            G  D G   D G L  II +  F+ LL +RNDARCPA GFYTY+AFI AA+ FP FGN+G++ MRKREIAAF  QT HETTGGW DAP G YAWGYCY+++++                 QY GRGPIQL+W
Sbjct:   76 GGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEINCQPYCDPSSNYQCVAGKQYCGRGPIQLSW 207          

HSP 2 Score: 27.7202 bits (60), Expect = 1.232e-39
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  485 NCNYLRCGEALGVDLLNNPDLLATD 559
            N NY  CG+ L + LL  P+L+ TD
Sbjct:  208 NYNYGLCGDDLKLPLLQEPELVETD 232          
BLAST of CF509834 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.637e-39
Identity = 78/157 (49.68%), Postives = 102/157 (64.97%), Query Frame = 1
Query:   67 CGSGV-VCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIR-QVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWELQLLKVRRSLGGGLV 531
            CG+    CG       +  G++G++I+R MF D+L +RN+  CP +GFYTYDAFI AA+AFPGFG +G+ T RKREIAAF AQT HETTGGW  AP G YAWGYCY+R Q SP +              +YYGRGPIQ+++     +  +++G  LV
Sbjct:   44 CGNTADYCGSGCQSQCSSTGDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLV 200          
BLAST of CF509834 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 8.125e-39
Identity = 73/138 (52.90%), Postives = 96/138 (69.57%), Query Frame = 1
Query:  121 GELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWELQLLKVRRSLGGGLV 531
            G+L  IISR  F+D+L +RND  CPARGFYTYDAFI AA++FPGFG +G+   RK+EIAAFF QT HETTGGW  AP G Y+WGYC+ ++ +P+S+            G+ YYGRGP+QL+W     +  R++G  L+
Sbjct:   69 GDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLL 206          
BLAST of CF509834 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.386e-38
Identity = 75/157 (47.77%), Postives = 99/157 (63.06%), Query Frame = 1
Query:   67 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWELQLLKVRRSLGGGLVEQ 537
            CG G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AA+A+P FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYC++R+ +P++              QYYGRGPIQ++W     +  R++G  L+ +
Sbjct:   58 CGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNK 212          
BLAST of CF509834 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.032e-38
Identity = 76/162 (46.91%), Postives = 100/162 (61.73%), Query Frame = 1
Query:   67 CGS-----GVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWELQLLKVRRSLGGGLVEQ 537
            CGS     G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AA+A+P FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYC++R+ +P++              QYYGRGPIQ++W     +  R++G  L+ +
Sbjct:   50 CGSTTDYCGKDCQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNK 211          
BLAST of CF509834 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.532e-37
Identity = 72/138 (52.17%), Postives = 94/138 (68.12%), Query Frame = 1
Query:  121 GELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWELQLLKVRRSLGGGLV 531
            G+L  IIS   F+D+L +RNDA CPARGFYTY+AFI AA++FPGFG +G+   RK+E+AAFF QT HETTGGW  AP G Y+WGYC+ ++ +PAS             G +YYGRGP+QL+W        R++G  L+
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLL 221          
BLAST of CF509834 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.187e-37
Identity = 62/123 (50.41%), Postives = 83/123 (67.48%), Query Frame = 1
Query:  112 TDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLT 480
            T GG++G+++   +F+ +L YRND RC   GFYTYDAFI AA++F GFG +G++  +K+E+AAF AQT HETTGGW  AP G YAWGYC++ + +                 +YYGRGPIQLT
Sbjct:   75 TGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLT 197          

HSP 2 Score: 32.7278 bits (73), Expect = 3.187e-37
Identity = 14/25 (56.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query:  485 NCNYLRCGEALGVDLLNNPDLLATD 559
            N NY   G+A+  DL+NNPDLL+T+
Sbjct:  199 NYNYGLAGQAIKEDLINNPDLLSTN 223          
BLAST of CF509834 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 9.932e-37
Identity = 78/158 (49.37%), Postives = 99/158 (62.66%), Query Frame = 1
Query:   67 CGSGVVCGERDTGHGTD--GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWELQLLKVRRSLGGGLV 531
            CG G  C  +  G  T   GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FPGFG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+                 PG +Y+GRGPIQ++         R++G  L+
Sbjct:   54 CGPGN-CQSQCPGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLL 210          
BLAST of CF509834 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 9.932e-37
Identity = 75/151 (49.67%), Postives = 97/151 (64.24%), Query Frame = 1
Query:   85 CGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTG--GWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWELQLLKVRRSLGGGLV 531
            C  + +G G D G L  +I+RE F+ +L +RND  CPARGFYTYDAFI AA++FP F  +G++  RKRE+AAF AQT HETTG  GW  AP G Y WGYCY R+++PA               QY+GRGP+QLTW     +  R++G  L+
Sbjct:   58 CQSQCSGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELNPADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLL 207          
The following BLAST results are available for this feature:
BLAST of CF509834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIT_CARPA8.108e-4255.93Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI6_POPTR1.232e-3956.06Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIB_VITVI1.637e-3949.68Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI2_BRANA8.125e-3952.90Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIT_PHAVU1.386e-3847.77Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU4.032e-3846.91Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHIB_ARATH1.532e-3752.17Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIX_PEA3.187e-3750.41Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI2_TOBAC9.932e-3749.37Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_THECC9.932e-3749.67Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-342 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509834 ID=CF509834; Name=CF509834; organism=Citrus sinensis; type=EST; length=561bp
CTCATTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTACTAGG
AGGTTCAGCACAGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATA
CTGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAG
ATGTTTGAAGACTTGCTTCCGTATAGAAATGATGCCCGATGCCCTGCCAG
AGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAG
GCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCC
TTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGACCGATGCACC
TGGTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCCTG
CGTCGTCCGACTACTGTTATCCTTACTGTCCATGTCCCTTGCCAGGGCAA
TACTATGGCCGAGGTCCAATTCAACTCACTTGGGAATTGCAATTACTTAA
GGTGCGGAGAAGCCTTGGGGGTGGACTTGTTGAACAATCCAGACCTACTT
GCCACTGATCC
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