CF509835

Overview
NameCF509835
Unique NameCF509835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12302 contig Csv1_Contig12302:36..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF509835 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.351e-55
Identity = 101/218 (46.33%), Postives = 150/218 (68.81%), Query Frame = 3 
Query:    3 EMELPLKSIALTIVIVTVLTWAWRVLNWVWLRPEKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGKNSFMWFGPTPRVNIMNPDQIKEIFTRINDFQKVNSI--PLARLLIVGLATLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCIEIITKWEKQMSVEGSSELDVWPYLANLTSDVISRTAFGS 650
            +M+   K+IA TI  + V+ WAWRVL+W W  P+++EK LRQQG +GN YR L GD+KE+    +EA ++P+  +++I  R+ P ++  +N YG+NSF W G  PR+++M P+ IKE+ T  + +QK   +  PL + L+ G+ + EG KW+KHR++I+PAF  EKLK MLPAF +   +++TKWEK    +GS E+D++P    LTSDVIS+ AFGS
Sbjct:    4 DMDTIRKAIAATIFAL-VMAWAWRVLDWAWFTPKRIEKRLRQQGFRGNPYRFLVGDVKESGKMHQEALSKPMEFNNDIVPRLMPHINHTINTYGRNSFTWMGRIPRIHVMEPELIKEVLTHSSKYQKNFDVHNPLVKFLLTGVGSFEGAKWSKHRRIISPAFTLEKLKSMLPAFAICYHDMLTKWEKIAEKQGSHEVDIFPTFDVLTSDVISKVAFGS 220
[Close]
BLAST of CF509835 vs. ExPASy Swiss-Prot
Match: CP4F8_HUMAN (Cytochrome P450 4F8 OS=Homo sapiens GN=CYP4F8 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.300e-11
Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = 3 
Query:  258 LHKLVNDYGKNSFMWFGP-TPRVNIMNPDQIKEIFTR---INDFQKVNSIPLARLLIVGLATLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCIEIITKWEKQMSVEGSSELDVWPYLANLTSDVISRTAF 644
            L +LV  Y +    W GP TP +N+ +PD ++ +      I D   V    L   L  GL    G+KW  HR+L+ PAFH   LK  +  F  S   +  KW++ +++EGS+ LDV+ +++ +T D + +  F
Sbjct:   77 LTQLVATYPQGFVRWLGPITPIINLCHPDIVRSVINTSDAITDKDIVFYKTLKPWLGDGLLLSVGDKWRHHRRLLTPAFHFNILKPYIKIFSKSANIMHAKWQR-LAMEGSTCLDVFEHISLMTLDSLQKCIF 208
The following BLAST results are available for this feature:
BLAST of CF509835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C72A1_CATRO6.351e-5546.33Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
CP4F8_HUMAN3.300e-1133.08Cytochrome P450 4F8 OS=Homo sapiens GN=CYP4F8 PE=1... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-343 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509835 ID=CF509835; Name=CF509835; organism=Citrus sinensis; type=EST; length=650bp
GTGAAATGGAGTTGCCTCTGAAATCCATAGCTTTGACCATTGTTATTGTA
ACGGTGCTAACATGGGCATGGAGAGTGCTGAACTGGGTGTGGCTGAGGCC
CGAGAAGCTGGAGAAATTCCTGAGACAGCAAGGTTTAAAAGGCAATTCTT
ACAGGCTTCTGTTTGGTGACTTGAAAGAAAATTCCATCGAGCTGAAGGAA
GCCAAAGCCAGACCCCTCAGTTTGGATGACAATATTGCTATTCGTGTCAA
TCCATTCCTTCATAAACTGGTAAATGATTATGGTAAGAATTCTTTCATGT
GGTTTGGTCCGACACCAAGGGTGAACATTATGAATCCTGATCAAATAAAA
GAGATATTTACCAGGATCAATGATTTTCAAAAAGTCAATTCAATCCCACT
TGCCAGGCTGCTGATAGTTGGATTGGCTACCCTTGAGGGGGAGAAGTGGG
CTAAACATAGAAAACTCATCAACCCAGCCTTCCACCAAGAGAAGCTCAAG
CTTATGTTGCCAGCATTCTACTTGAGTTGTATCGAAATAATTACAAAGTG
GGAGAAGCAAATGTCTGTAGAAGGATCATCTGAGTTGGATGTATGGCCTT
ATCTTGCAAATTTAACAAGTGATGTGATTTCTCGAACGGCTTTTGGGAGT
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