CF509836

Overview
NameCF509836
Unique NameCF509836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length466
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF509836_ssr44 microsatellite CF509836_ssr44:44..55. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10886 contig Csv1_Contig10886:9..476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509836 vs. ExPASy Swiss-Prot
Match: CALX_SOYBN (Calnexin homolog OS=Glycine max PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 6.681e-47
Identity = 87/114 (76.32%), Postives = 99/114 (86.84%), Query Frame = 1
Query:  130 LISASDDA--TILYESYDESFDGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNES 465
            L+ ASDDA   I YES+DE FDGRWIVS K++Y GVWKH+KS+GH+DYGLLV E A+KYAIVKEL E +SLKDGTVVLQ+E RLQNGLECGGAY+KYLRPQE+GW  KEFDNES
Sbjct:   28 LVRASDDADDAIFYESFDEDFDGRWIVSDKEDYNGVWKHAKSDGHDDYGLLVSEQARKYAIVKELAESVSLKDGTVVLQFETRLQNGLECGGAYIKYLRPQESGWKPKEFDNES 141          
BLAST of CF509836 vs. ExPASy Swiss-Prot
Match: CALX1_ARATH (Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 6.681e-47
Identity = 85/113 (75.22%), Postives = 97/113 (85.84%), Query Frame = 1
Query:  127 QLISASDDATILYESYDESFDGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNES 465
            Q +   DD T+LYES+DE FDGRWIVS+  +Y+GVWKH+KSEGHEDYGLLV E A+KY IVKELDEPL+LK+GTVVLQYEVR Q GLECGGAYLKYLRPQEAGW  + FD+ES
Sbjct:   20 QKLCYCDDQTVLYESFDEPFDGRWIVSKNSDYEGVWKHAKSEGHEDYGLLVSEKARKYGIVKELDEPLNLKEGTVVLQYEVRFQEGLECGGAYLKYLRPQEAGWTPQGFDSES 132          
BLAST of CF509836 vs. ExPASy Swiss-Prot
Match: CALX_HELTU (Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 3.316e-46
Identity = 85/111 (76.58%), Postives = 99/111 (89.19%), Query Frame = 1
Query:  133 ISASDDATILYESYDESFDGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNES 465
            I AS DA I YES+DESF+G WIVS+K++Y G WKHSKSEGH+DYGLLV + A+KYAIVKEL++P+ LKDGT+VLQYEVRLQNGLECGGAYLKYLRPQ+AGW +K FDNES
Sbjct:   27 ICASSDA-IFYESFDESFEGSWIVSEKEDYPGEWKHSKSEGHDDYGLLVSDKARKYAIVKELEKPVELKDGTIVLQYEVRLQNGLECGGAYLKYLRPQDAGWTAKGFDNES 136          
BLAST of CF509836 vs. ExPASy Swiss-Prot
Match: CALX2_ARATH (Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g07340 PE=2 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 4.331e-46
Identity = 86/113 (76.11%), Postives = 96/113 (84.96%), Query Frame = 1
Query:  133 ISASDDATILYESYDESFDGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKEL--DEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNES 465
            +S  DD TILYES+DE FDGRW+VS+K EY+GVWKH KSEGH+DYGLLV E AKKY IVKEL  DEPL+L +GTVVLQYE R Q GLECGGAYLKYLRPQEAGWV + FDN+S
Sbjct:   22 VSYCDDQTILYESFDEPFDGRWVVSEKAEYQGVWKHEKSEGHDDYGLLVSEKAKKYGIVKELDVDEPLNLNEGTVVLQYEARFQEGLECGGAYLKYLRPQEAGWVPQGFDNDS 134          
BLAST of CF509836 vs. ExPASy Swiss-Prot
Match: CALX_PEA (Calnexin homolog OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 9.648e-46
Identity = 86/114 (75.44%), Postives = 97/114 (85.09%), Query Frame = 1
Query:  130 LISASD--DATILYESYDESFDGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNES 465
            L+ ASD  D  I YES+DE FD RWIVS K+EY GVWKHSKSEGH+D+GLLV EPA+KYAIVKELD P+SLKDGTVVLQ+E RLQNGLECGGAY+KYL+ QE+GW  K FDNES
Sbjct:   29 LVRASDEVDDAIFYESFDEDFDNRWIVSGKEEYNGVWKHSKSEGHDDFGLLVSEPARKYAIVKELDAPVSLKDGTVVLQFETRLQNGLECGGAYIKYLQTQESGWKPKGFDNES 142          
The following BLAST results are available for this feature:
BLAST of CF509836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CALX_SOYBN6.681e-4776.32Calnexin homolog OS=Glycine max PE=2 SV=1[more]
CALX1_ARATH6.681e-4775.22Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1... [more]
CALX_HELTU3.316e-4676.58Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1[more]
CALX2_ARATH4.331e-4676.11Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g... [more]
CALX_PEA9.648e-4675.44Calnexin homolog OS=Pisum sativum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509836 ID=CF509836; Name=CF509836; organism=Citrus sinensis; type=EST; length=466bp
GGTTGATTGATTTTAAGATTTAGATTCAGATCGCGGTCTCGGACTCTCTC
TCTCTCACACATGGTGCAGAGAATGGCTGTCTCTCTGCGGTTCGCTCTCC
TGCTTTTCGCTGCTTTCGTTTCATTTCAATTGATCTCCGCTTCTGATGAT
GCCACGATCTTGTACGAGTCGTATGACGAGTCGTTCGACGGACGATGGAT
CGTTTCTCAGAAAGATGAATACAAAGGTGTATGGAAGCATTCAAAGAGTG
AGGGTCATGAAGATTATGGCCTTCTTGTTGGTGAGCCGGCAAAGAAGTAC
GCGATAGTGAAGGAGCTTGATGAGCCCCTGAGTTTGAAGGATGGAACTGT
TGTCCTCCAGTATGAGGTTCGCCTCCAGAATGGTCTTGAATGTGGTGGTG
CATATCTGAAATACCTGCGGCCTCAGGAGGCAGGTTGGGTATCCAAGGAG
TTCGACAATGAATCTC
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