CF509838

Overview
NameCF509838
Unique NameCF509838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3944 contig Csv1_Contig3944:127..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509838 vs. ExPASy Swiss-Prot
Match: SEC13_RAT (Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.478e-52
Identity = 91/160 (56.88%), Postives = 115/160 (71.88%), Query Frame = 1
Query:  115 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTARADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 594
            ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAHP +G+ILASCSYD +VIIWKE N   W + H  + H SSVNS+ WAPH+ GL LACGSSDG IS+ T   +G W+  +I+ AH +G  +VSWAPA+ PG+
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166          
BLAST of CF509838 vs. ExPASy Swiss-Prot
Match: SEC13_MOUSE (Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3)

HSP 1 Score: 204.912 bits (520), Expect = 2.478e-52
Identity = 91/160 (56.88%), Postives = 115/160 (71.88%), Query Frame = 1
Query:  115 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTARADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 594
            ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAHP +G+ILASCSYD +VIIWKE N   W + H  + H SSVNS+ WAPH+ GL LACGSSDG IS+ T   +G W+  +I+ AH +G  +VSWAPA+ PG+
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166          
BLAST of CF509838 vs. ExPASy Swiss-Prot
Match: SEC13_HUMAN (Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3)

HSP 1 Score: 202.986 bits (515), Expect = 9.417e-52
Identity = 90/160 (56.25%), Postives = 115/160 (71.88%), Query Frame = 1
Query:  115 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTARADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 594
            ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAHP +G+ILASCSYD +VIIW+E N   W ++H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T   +G W+  +I+ AH +G  +VSWAPA+ PG+
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN-GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166          
BLAST of CF509838 vs. ExPASy Swiss-Prot
Match: SEC13_BOVIN (Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.098e-51
Identity = 91/160 (56.88%), Postives = 113/160 (70.62%), Query Frame = 1
Query:  115 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTARADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 594
            ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAHP +G+ILASCSYD +VIIWKE N   W + H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T    G W+  +I+ AH +G  +VSWAPA+ PG+
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILVADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGLGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166          
BLAST of CF509838 vs. ExPASy Swiss-Prot
Match: SEC13_DICDI (Protein transport protein SEC13 OS=Dictyostelium discoideum GN=sec13 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.374e-49
Identity = 89/163 (54.60%), Postives = 110/163 (67.48%), Query Frame = 1
Query:  100 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTARADGGWDTTRIDQAHPVGVTSVSWAPAMAP 588
            M  Q +++GHED VHD   D+YGK LAT SSD  IKI  +     QHL  L+GH GPVWQVAWAHPKFG ILAS SYD +VI+WKE   N W+  H +  H+ SVNSI+WAPHE GLSLAC SSDG++++     +  W+  +  Q   +GV SVSW+PA  P
Sbjct:    1 MATQNVDSGHEDMVHDAQFDYYGKFLATCSSDKMIKIFDVGGENPQHLVDLRGHEGPVWQVAWAHPKFGKILASASYDRKVIVWKEVGNNSWSIIHQYAGHELSVNSISWAPHEFGLSLACASSDGSVTIHNYN-NNVWEAPQKIQVSQIGVNSVSWSPAAIP 162          
BLAST of CF509838 vs. ExPASy Swiss-Prot
Match: SEC13_USTMA (Protein transport protein SEC13 OS=Ustilago maydis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.171e-48
Identity = 98/186 (52.69%), Postives = 118/186 (63.44%), Query Frame = 1
Query:  109 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLA-TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE-------------GNQN----------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTARADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 594
            + IET HED VHD  +DFYGKRLAT SSD ++K+  + N      A TL GH+GPVWQVAWAHP FG ILASCSYDG+V+IWK+             G+Q+           WT+      H +SVNSI+WAPHELG  LAC SSDGN+SV T   DG W    +  AHPVG  +VSWAPA+ PG+
Sbjct:   19 KNIETQHEDMVHDAQLDFYGKRLATCSSDRTVKVFDIVNGTPSTTAETLHGHQGPVWQVAWAHPTFGDILASCSYDGKVVIWKDNGAGASIGASAPYGSQSAYGAPTSSAGGWTKIKEHTLHTASVNSISWAPHELGSILACASSDGNVSVLTFNNDGTWAVDLV-AAHPVGCNAVSWAPAVVPGS 203          
BLAST of CF509838 vs. ExPASy Swiss-Prot
Match: SEC13_COCIM (Protein transport protein SEC13 OS=Coccidioides immitis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 6.984e-47
Identity = 90/163 (55.21%), Postives = 116/163 (71.17%), Query Frame = 1
Query:  121 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ-----NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTARADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 594
            +GH+D +HD  MD+YG+RLAT SSD +IKI  L   + + + TLKGH G VW VAWAHPKFG+ILAS SYDG+V+IW+E +      + W++   F+ H +SVN ++WAPHELG  LAC SSDG++SV   R D  W T +I  AH +GV SVSWAPA APG+
Sbjct:    8 SGHDDMIHDAGMDYYGRRLATCSSDKTIKIFELEGDSHRLIETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQSSAASTGSSWSRVFDFSLHTASVNMVSWAPHELGCVLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSVSWAPAAAPGS 168          
BLAST of CF509838 vs. ExPASy Swiss-Prot
Match: SEC13_ASPNC (Protein transport protein sec13 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec13 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.654e-46
Identity = 92/174 (52.87%), Postives = 119/174 (68.39%), Query Frame = 1
Query:  100 MPAQKIE-TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN--------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTARADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 594
            M AQ I  +GH++ +HD  +D+YG+RLAT SSD +IKI  +     + + TLKGH G VW VAWAHPKFG+ILAS SYDG+V+IW+E +QN         WT+   F+ H +SVN ++WAPHE G  LAC SSDG++SV   R D  W T +I  AH +GV S+SWAPA APG+
Sbjct:    1 MAAQVISNSGHDEMIHDAGLDYYGRRLATCSSDKTIKIFEIEGETHRLIETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQHQNATSPVAGGAWTKVFDFSLHTASVNMVSWAPHESGCLLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAAAPGS 172          
BLAST of CF509838 vs. ExPASy Swiss-Prot
Match: SEC13_EMENI (Protein transport protein sec13 OS=Emericella nidulans GN=sec13 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.466e-46
Identity = 88/166 (53.01%), Postives = 115/166 (69.28%), Query Frame = 1
Query:  121 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND--------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTARADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 594
            +GH+D +HD  +D+YG+RLAT SSD +IKI  +     + + TLKGH GPVW V WAHPKFG+ILAS SYDG+V+IW+E +Q+         WT+   F+ H +SVN I+WAPHE G  LAC SSDG++SV   R D  W T +I  AH +GV S+SWAPA +PG+
Sbjct:   10 SGHDDMIHDAGLDYYGRRLATCSSDKTIKIFEIEGDTHKLVETLKGHEGPVWCVEWAHPKFGTILASSSYDGKVLIWREQHQSSTAPIGSGAWTKVFDFSLHTASVNMISWAPHETGCLLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAASPGS 173          
BLAST of CF509838 vs. ExPASy Swiss-Prot
Match: SEC13_ASPTN (Protein transport protein sec13 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sec13 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.466e-46
Identity = 88/166 (53.01%), Postives = 115/166 (69.28%), Query Frame = 1
Query:  121 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND--------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTARADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 594
            +GHED +HD  +D+YG+RLAT SSD +IK+  +   A + + TLKGH G VW VAWAHPKFG+ILAS SYDG+V+IW+E +QN         WT+   F+ H +SVN ++WAPHE G  L C SSDG++SV   + D  W T +I  AH +GV S+SWAPA APG+
Sbjct:   10 SGHEDMIHDAGLDYYGRRLATCSSDKTIKVFEIEGEAHRLVETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQHQNTTSPAAGSAWTKVFDFSLHTASVNMVSWAPHESGCLLGCASSDGHVSVLEFQ-DNSW-THQIFHAHGMGVNSISWAPAAAPGS 173          
The following BLAST results are available for this feature:
BLAST of CF509838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
SEC13_RAT2.478e-5256.88Protein SEC13 homolog OS=Rattus norvegicus GN=Sec1... [more]
SEC13_MOUSE2.478e-5256.88Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=... [more]
SEC13_HUMAN9.417e-5256.25Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=... [more]
SEC13_BOVIN2.098e-5156.88Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 ... [more]
SEC13_DICDI4.374e-4954.60Protein transport protein SEC13 OS=Dictyostelium d... [more]
SEC13_USTMA2.171e-4852.69Protein transport protein SEC13 OS=Ustilago maydis... [more]
SEC13_COCIM6.984e-4755.21Protein transport protein SEC13 OS=Coccidioides im... [more]
SEC13_ASPNC2.654e-4652.87Protein transport protein sec13 OS=Aspergillus nig... [more]
SEC13_EMENI3.466e-4653.01Protein transport protein sec13 OS=Emericella nidu... [more]
SEC13_ASPTN3.466e-4653.01Protein transport protein sec13 OS=Aspergillus ter... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-346 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509838 ID=CF509838; Name=CF509838; organism=Citrus sinensis; type=EST; length=594bp
CTTAGAAATTTGAAGCTGAGAACATAAGATAAAAGGAGCTACGAACTAGT
GATCAAGGAGTTAAAGTTTGAGGGGTAAAATCAAGAAATATAAAGTAAGA
TGCCTGCACAAAAAATTGAAACTGGTCATGAAGACACTGTCCATGATGTA
GCCATGGATTTCTATGGAAAACGTTTAGCCACAGCTTCGTCTGACTCCAG
CATTAAGATAATTGGTTTAAGCAACTCTGCTTCCCAGCACCTTGCTACAT
TGAAAGGTCATAGAGGTCCTGTTTGGCAAGTTGCATGGGCACACCCCAAG
TTTGGGTCAATCCTTGCTTCCTGTTCCTATGATGGCCAAGTTATTATCTG
GAAGGAAGGTAATCAAAATGATTGGACACAGGCTCATACTTTTAATGATC
ATAAATCATCTGTCAACTCCATTGCTTGGGCACCTCATGAGCTAGGTCTC
TCCTTGGCTTGTGGATCTTCTGATGGGAACATCTCAGTCTTTACTGCTAG
AGCTGATGGTGGCTGGGATACTACCAGGATAGACCAGGCCCATCCAGTCG
GAGTAACATCTGTTTCATGGGCCCCGGCAATGGCTCCTGGTGCT
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