CF509841
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF509841 vs. ExPASy Swiss-Prot
Match: SGS3_SOLLC (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1) HSP 1 Score: 215.698 bits (548), Expect = 1.183e-55 Identity = 106/173 (61.27%), Postives = 134/173 (77.46%), Query Frame = 2 Query: 2 KHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIAN 520 +HF+E G +RD+W + R F+ GGKR LYG+MA K+D+D FNQH GK+K KFEMRSY E V N +QM EDNQQLI+ KN+ K Q +KALE + S+VSEK R+T+EEN+IV+ +TKM HEQ KEEM+FQEQ FKDQI+IIH+AR +E+NFEK QQ++RE VKQS AN Sbjct: 377 EHFSENGRNRDAWERRSAR--FYPGGKRLLYGYMADKKDIDNFNQHSAGKSKLKFEMRSYKEAVWNPAKQMREDNQQLIWFKNKAAKHQMQAKALEESLSLVSEKHRQTLEENKIVRLKTKMHHEQIKEEMEFQEQFFKDQIKIIHDARTAREDNFEKTQQEQREMVKQSNAN 547
BLAST of CF509841 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSJ (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. japonica GN=SGS3 PE=2 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 1.001e-54 Identity = 99/169 (58.58%), Postives = 137/169 (81.07%), Query Frame = 2 Query: 5 HFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQS 511 HF Q TDR++WN++++ V F GGKRQLYGF+A K+D++ FN+HCHGK++ K+EMRSY+EMVV Q++QMSEDNQQL YLKN++VK+++HSK +E T S+V++KLRETMEEN IV+ + K +H + ++EM +QE+ F DQI IH+A +EKE FEKL Q+ER K +QS Sbjct: 354 HFVRQRTDRNTWNSAHK-VTFLPGGKRQLYGFLATKDDMETFNRHCHGKSRLKYEMRSYNEMVVTQMKQMSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKATEEKEIKFEKLLQEERAKARQS 521
BLAST of CF509841 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSI (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. indica GN=SGS3 PE=3 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 3.805e-54 Identity = 98/169 (57.99%), Postives = 136/169 (80.47%), Query Frame = 2 Query: 5 HFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQS 511 HF Q TDR++WN++++ V F GGKRQLYGF+A K+D++ FN+HCHGK++ K+EMRSY+EMVV Q++QMSEDNQQL YLKN++VK+++HSK +E T S+V++KLRETMEEN IV+ + K +H + ++EM +QE+ F DQI IH+ +EKE FEKL Q+ER K +QS Sbjct: 354 HFVRQRTDRNTWNSAHK-VTFLPGGKRQLYGFLATKDDMETFNRHCHGKSRLKYEMRSYNEMVVTQMKQMSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKPTEEKEIKFEKLLQEERAKARQS 521
BLAST of CF509841 vs. ExPASy Swiss-Prot
Match: SGS3_ARATH (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 4.970e-54 Identity = 105/179 (58.66%), Postives = 134/179 (74.86%), Query Frame = 2 Query: 2 KHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKV---KQSIANPKT 529 + AE G DR +W +R +F +GG RQLYGF+A K+DLD+FNQH GKT+ KFE++SY EMVV ++RQ+SEDNQQL Y KN++ K+ +H+K LE + I+SEKLR T E+NRIV+QRTKMQHEQN+EEMD ++ F D I+ IHE RD KEENFE LQQQER KV +Q NP + Sbjct: 374 RELAEMGLDRIAWGQ--KRSMF-SGGVRQLYGFLATKQDLDIFNQHSQGKTRLKFELKSYQEMVVKELRQISEDNQQLNYFKNKLSKQNKHAKVLEESLEIMSEKLRRTAEDNRIVRQRTKMQHEQNREEMDAHDRFFMDSIKQIHERRDAKEENFEMLQQQERAKVVGQQQQNINPSS 549
BLAST of CF509841 vs. ExPASy Swiss-Prot
Match: SGS3_MAIZE (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Zea mays GN=SGS3 PE=1 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 5.143e-51 Identity = 96/178 (53.93%), Postives = 136/178 (76.40%), Query Frame = 2 Query: 2 KHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKTLR 535 KHF QGTDR+SW+ R+V F GGKRQLYGF+A KED++ FN+HCHGK++ K+EMRSY+EMVV Q++QMSEDNQQL YLKN++VK ++ SKA+E + +V++KLRET+EEN V+ + K +H + +EEM QE++F I IH+A ++KE+ FEKL Q+ER K ++ + T++ Sbjct: 342 KHFVNQGTDRNSWHL--RKVRFVPGGKRQLYGFLANKEDMEAFNKHCHGKSRLKYEMRSYNEMVVIQMKQMSEDNQQLNYLKNKMVKTEQRSKAVEESLGVVTQKLRETIEENIFVRSKAKEKHMEYEEEMKSQEEIFHGLIEDIHKATEDKEKQFEKLLQEERSKARRFDVDSGTMK 517 The following BLAST results are available for this feature:
BLAST of CF509841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF509841 ID=CF509841; Name=CF509841; organism=Citrus sinensis; type=EST; length=550bpback to top |