CF509841

Overview
NameCF509841
Unique NameCF509841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length550
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig921 contig Csv1_Contig921:1..551. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509841 vs. ExPASy Swiss-Prot
Match: SGS3_SOLLC (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.183e-55
Identity = 106/173 (61.27%), Postives = 134/173 (77.46%), Query Frame = 2
Query:    2 KHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIAN 520
            +HF+E G +RD+W   + R  F+ GGKR LYG+MA K+D+D FNQH  GK+K KFEMRSY E V N  +QM EDNQQLI+ KN+  K Q  +KALE + S+VSEK R+T+EEN+IV+ +TKM HEQ KEEM+FQEQ FKDQI+IIH+AR  +E+NFEK QQ++RE VKQS AN
Sbjct:  377 EHFSENGRNRDAWERRSAR--FYPGGKRLLYGYMADKKDIDNFNQHSAGKSKLKFEMRSYKEAVWNPAKQMREDNQQLIWFKNKAAKHQMQAKALEESLSLVSEKHRQTLEENKIVRLKTKMHHEQIKEEMEFQEQFFKDQIKIIHDARTAREDNFEKTQQEQREMVKQSNAN 547          
BLAST of CF509841 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSJ (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. japonica GN=SGS3 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.001e-54
Identity = 99/169 (58.58%), Postives = 137/169 (81.07%), Query Frame = 2
Query:    5 HFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQS 511
            HF  Q TDR++WN++++ V F  GGKRQLYGF+A K+D++ FN+HCHGK++ K+EMRSY+EMVV Q++QMSEDNQQL YLKN++VK+++HSK +E T S+V++KLRETMEEN IV+ + K +H + ++EM +QE+ F DQI  IH+A +EKE  FEKL Q+ER K +QS
Sbjct:  354 HFVRQRTDRNTWNSAHK-VTFLPGGKRQLYGFLATKDDMETFNRHCHGKSRLKYEMRSYNEMVVTQMKQMSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKATEEKEIKFEKLLQEERAKARQS 521          
BLAST of CF509841 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSI (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. indica GN=SGS3 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 3.805e-54
Identity = 98/169 (57.99%), Postives = 136/169 (80.47%), Query Frame = 2
Query:    5 HFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQS 511
            HF  Q TDR++WN++++ V F  GGKRQLYGF+A K+D++ FN+HCHGK++ K+EMRSY+EMVV Q++QMSEDNQQL YLKN++VK+++HSK +E T S+V++KLRETMEEN IV+ + K +H + ++EM +QE+ F DQI  IH+  +EKE  FEKL Q+ER K +QS
Sbjct:  354 HFVRQRTDRNTWNSAHK-VTFLPGGKRQLYGFLATKDDMETFNRHCHGKSRLKYEMRSYNEMVVTQMKQMSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKPTEEKEIKFEKLLQEERAKARQS 521          
BLAST of CF509841 vs. ExPASy Swiss-Prot
Match: SGS3_ARATH (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.970e-54
Identity = 105/179 (58.66%), Postives = 134/179 (74.86%), Query Frame = 2
Query:    2 KHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKV---KQSIANPKT 529
            +  AE G DR +W    +R +F +GG RQLYGF+A K+DLD+FNQH  GKT+ KFE++SY EMVV ++RQ+SEDNQQL Y KN++ K+ +H+K LE +  I+SEKLR T E+NRIV+QRTKMQHEQN+EEMD  ++ F D I+ IHE RD KEENFE LQQQER KV   +Q   NP +
Sbjct:  374 RELAEMGLDRIAWGQ--KRSMF-SGGVRQLYGFLATKQDLDIFNQHSQGKTRLKFELKSYQEMVVKELRQISEDNQQLNYFKNKLSKQNKHAKVLEESLEIMSEKLRRTAEDNRIVRQRTKMQHEQNREEMDAHDRFFMDSIKQIHERRDAKEENFEMLQQQERAKVVGQQQQNINPSS 549          
BLAST of CF509841 vs. ExPASy Swiss-Prot
Match: SGS3_MAIZE (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Zea mays GN=SGS3 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 5.143e-51
Identity = 96/178 (53.93%), Postives = 136/178 (76.40%), Query Frame = 2
Query:    2 KHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKTLR 535
            KHF  QGTDR+SW+   R+V F  GGKRQLYGF+A KED++ FN+HCHGK++ K+EMRSY+EMVV Q++QMSEDNQQL YLKN++VK ++ SKA+E +  +V++KLRET+EEN  V+ + K +H + +EEM  QE++F   I  IH+A ++KE+ FEKL Q+ER K ++   +  T++
Sbjct:  342 KHFVNQGTDRNSWHL--RKVRFVPGGKRQLYGFLANKEDMEAFNKHCHGKSRLKYEMRSYNEMVVIQMKQMSEDNQQLNYLKNKMVKTEQRSKAVEESLGVVTQKLRETIEENIFVRSKAKEKHMEYEEEMKSQEEIFHGLIEDIHKATEDKEKQFEKLLQEERSKARRFDVDSGTMK 517          
The following BLAST results are available for this feature:
BLAST of CF509841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SGS3_SOLLC1.183e-5561.27Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum ... [more]
SGS3_ORYSJ1.001e-5458.58Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=... [more]
SGS3_ORYSI3.805e-5457.99Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=... [more]
SGS3_ARATH4.970e-5458.66Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidop... [more]
SGS3_MAIZE5.143e-5153.93Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-349 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509841 ID=CF509841; Name=CF509841; organism=Citrus sinensis; type=EST; length=550bp
TAAGCATTTTGCCGAGCAAGGAACAGATAGAGATTCGTGGAATAACAGTA
ACCGCAGAGTTTTATTCCATGCTGGTGGAAAGCGCCAACTTTATGGCTTC
ATGGCACTGAAAGAAGACTTGGATGTCTTCAACCAGCATTGCCACGGTAA
AACAAAGCAGAAATTTGAGATGAGATCATACCACGAGATGGTTGTGAATC
AGATCAGGCAAATGAGCGAGGATAATCAACAGCTCATATATTTGAAGAAT
AGGGTTGTGAAAGAACAAAGGCACTCAAAAGCTCTTGAAGCAACTTTTAG
TATTGTGAGTGAGAAGCTGCGTGAGACCATGGAGGAAAACCGCATTGTGA
AACAGAGAACCAAAATGCAACATGAGCAGAACAAAGAAGAGATGGATTTT
CAAGAGCAACTCTTCAAGGACCAGATTAGAATAATTCATGAAGCAAGGGA
TGAAAAGGAAGAGAATTTTGAGAAGCTGCAACAACAGGAACGAGAGAAGG
TTAAGCAATCAATTGCTAATCCTAAAACACTGAGGACTACAAGCGCAGGG
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