CF509849

Overview
NameCF509849
Unique NameCF509849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2904 contig Csv1_Contig2904:176..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509849 vs. ExPASy Swiss-Prot
Match: IMA_SOLLC (Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 3.764e-48
Identity = 96/158 (60.76%), Postives = 120/158 (75.95%), Query Frame = 2
Query:    2 LRPSTRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREXXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG 475
            LRP++R E R+  YK  V           N+VEIRKNKRE+NLLKKRRE            A+ + ++KKLE++P ++ GVWS+D +LQLE TTQFRKLLSIER+PPI+EVI++GVVPRFVEFL R D PQLQFEAAWALTN+ASGTSE+T+VVI++G
Sbjct:    3 LRPNSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLQAQQFPST-AAVSHLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYG 159          
BLAST of CF509849 vs. ExPASy Swiss-Prot
Match: IMA1_ARATH (Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 4.916e-48
Identity = 96/157 (61.15%), Postives = 118/157 (75.16%), Query Frame = 2
Query:    2 LRPSTRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREXXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEH 472
            LRP+ + EVR+  YK  V           N+VEIRK+KRE++L+KKRRE            AS  +++KKL+S+  MV GVWS+DPALQLE+TTQFRKLLSIERSPPI+EVI AGVVPRFVEFL + D P +QFEAAWALTN+ASGTS+HT+VVI+H
Sbjct:    3 LRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP--SASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDH 157          
BLAST of CF509849 vs. ExPASy Swiss-Prot
Match: IMA1A_ORYSJ (Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 1.095e-47
Identity = 98/158 (62.03%), Postives = 120/158 (75.95%), Query Frame = 2
Query:    2 LRPSTRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREXXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG 475
            LRPS R EVR+  YK  V           N+VEIRK++RE++LLKKRRE            A+   ++KKLES+P+M+ GV+S+D  LQLEATTQFRKLLSIERSPPI+EVI++GVVPRFV+FL R D PQLQFEAAWALTN+ASGTSE+T+VVI+HG
Sbjct:    3 LRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAAT--GVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHG 158          
BLAST of CF509849 vs. ExPASy Swiss-Prot
Match: IMA1B_ORYSJ (Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 3.895e-45
Identity = 95/162 (58.64%), Postives = 117/162 (72.22%), Query Frame = 2
Query:    2 LRPSTRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREXXXXXXXXXXXD----ASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG 475
            LRPS RAEVR+  YK  V           N+VEIRK++RE++LLKKRR+                A  +A+++KLE +P+MVQ V S+D A+QLEATTQFRKLLSIERSPPI+EVI  GVVPRF+ FL R D PQLQFEAAWALTN+ASGTS++T+VV+E G
Sbjct:    3 LRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGLPAAAAAAAAASPLLAHSSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESG 164          
BLAST of CF509849 vs. ExPASy Swiss-Prot
Match: IMA2_ARATH (Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 3.194e-39
Identity = 84/159 (52.83%), Postives = 107/159 (67.30%), Query Frame = 2
Query:    2 LRPSTRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKR-REXXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG 475
            LRPS + EVR+  YK  V           NLVEIRKNKRE+NL KKR              +   ++  +  +++P+MV G+WSED   QLEAT   RKLLSIE++PPI+EV+++GVVPR V+FL R D P+LQFEAAWALTN+ASGTSE+T V+IE G
Sbjct:    3 LRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSATGQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESG 161          
BLAST of CF509849 vs. ExPASy Swiss-Prot
Match: IMAB_DICDI (Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.141e-35
Identity = 79/154 (51.30%), Postives = 101/154 (65.58%), Query Frame = 2
Query:   14 TRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREXXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG 475
            ++ E RK  YK  +             + IRKNKRE++LLKKR +               + I ++LE +PS+V  + SE+P L L++TT FRKLLSIE+SPPI+EVIK G+VPR V+FL   D PQLQFEAAWALTN+ASGT E TRVVIE+G
Sbjct:    4 SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKV----DSLINQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQDFPQLQFEAAWALTNIASGTPEQTRVVIENG 153          
BLAST of CF509849 vs. ExPASy Swiss-Prot
Match: IMA3_MOUSE (Importin subunit alpha-3 OS=Mus musculus GN=Kpna3 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.848e-25
Identity = 61/125 (48.80%), Postives = 82/125 (65.60%), Query Frame = 2
Query:   95 VEIRKNKREDNLLKKRREXXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIE 469
            VE+RKNKR+++LLKKR             DA   A    LE+I   +Q   S++P +QL A    RKLLS +R+PPID++IK+G++P  V+ L R D P LQFEAAWALTN+ASGTS  T+ V++
Sbjct:   34 VELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVTLEAI---LQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIASGTSAQTQAVVQ 155          
BLAST of CF509849 vs. ExPASy Swiss-Prot
Match: IMA3_HUMAN (Importin subunit alpha-3 OS=Homo sapiens GN=KPNA3 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 5.848e-25
Identity = 61/125 (48.80%), Postives = 82/125 (65.60%), Query Frame = 2
Query:   95 VEIRKNKREDNLLKKRREXXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIE 469
            VE+RKNKR+++LLKKR             DA   A    LE+I   +Q   S++P +QL A    RKLLS +R+PPID++IK+G++P  V+ L R D P LQFEAAWALTN+ASGTS  T+ V++
Sbjct:   34 VELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVTLEAI---LQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIASGTSAQTQAVVQ 155          
BLAST of CF509849 vs. ExPASy Swiss-Prot
Match: IMA1_XENLA (Importin subunit alpha-1 OS=Xenopus laevis GN=kpna1 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 5.848e-25
Identity = 55/127 (43.31%), Postives = 84/127 (66.14%), Query Frame = 2
Query:   95 VEIRKNKREDNLLKKRREXXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG 475
            VE+RK K+++ +LK+R               +  +++    S+  +VQG+ S DP  +L  T   RK+LS ER+PP++++I+AG++P+ VEFL RHD   LQFEAAWALTN+ASGTS+ T+ V++ G
Sbjct:   33 VELRKAKKDEQILKRRNVCLPEELILSPEKNAMQSVQVPPLSLEEIVQGMNSGDPENELRCTQAARKMLSRERNPPLNDIIEAGLIPKLVEFLSRHDNSTLQFEAAWALTNIASGTSDQTKSVVDGG 159          
BLAST of CF509849 vs. ExPASy Swiss-Prot
Match: IMA2_HUMAN (Importin subunit alpha-2 OS=Homo sapiens GN=KPNA2 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.975e-25
Identity = 57/127 (44.88%), Postives = 82/127 (64.57%), Query Frame = 2
Query:   95 VEIRKNKREDNLLKKRREXXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG 475
            VE+RK K++D +LK+R               ++N       S+  +V+G+ S +   QL+AT   RKLLS E+ PPID +I+AG++P+FV FLGR D   +QFE+AWALTN+ASGTSE T+ V++ G
Sbjct:   36 VELRKAKKDDQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGG 162          
The following BLAST results are available for this feature:
BLAST of CF509849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
IMA_SOLLC3.764e-4860.76Importin subunit alpha OS=Solanum lycopersicum PE=... [more]
IMA1_ARATH4.916e-4861.15Importin subunit alpha-1 OS=Arabidopsis thaliana G... [more]
IMA1A_ORYSJ1.095e-4762.03Importin subunit alpha-1a OS=Oryza sativa subsp. j... [more]
IMA1B_ORYSJ3.895e-4558.64Importin subunit alpha-1b OS=Oryza sativa subsp. j... [more]
IMA2_ARATH3.194e-3952.83Importin subunit alpha-2 OS=Arabidopsis thaliana G... [more]
IMAB_DICDI8.141e-3551.30Importin subunit alpha-B OS=Dictyostelium discoide... [more]
IMA3_MOUSE5.848e-2548.80Importin subunit alpha-3 OS=Mus musculus GN=Kpna3 ... [more]
IMA3_HUMAN5.848e-2548.80Importin subunit alpha-3 OS=Homo sapiens GN=KPNA3 ... [more]
IMA1_XENLA5.848e-2543.31Importin subunit alpha-1 OS=Xenopus laevis GN=kpna... [more]
IMA2_HUMAN9.975e-2544.88Importin subunit alpha-2 OS=Homo sapiens GN=KPNA2 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-357 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509849 ID=CF509849; Name=CF509849; organism=Citrus sinensis; type=EST; length=475bp
GTTGAGACCGAGCACGCGAGCGGAGGTGAGGAAGAAGGGGTACAAAACGG
GAGTCGATGCGGATGAGGCGCGGCGGCGGAGAGAGGACAATCTGGTGGAG
ATCAGAAAGAACAAAAGGGAAGATAATTTGTTGAAGAAACGACGCGAAGG
TCTCCTGCTTCAGCCTCAGCAACAAGGCCTCGATGCCTCGCAAAACGCCA
TTGAAAAGAAGTTGGAAAGTATTCCTTCTATGGTACAAGGAGTGTGGTCT
GAGGATCCTGCATTACAGTTGGAAGCAACTACGCAGTTTAGAAAGCTGTT
ATCAATTGAACGCAGCCCTCCAATTGATGAAGTAATTAAAGCTGGTGTTG
TCCCGCGCTTTGTGGAGTTTCTAGGAAGGCATGATATGCCTCAACTACAA
TTTGAGGCTGCATGGGCATTGACCAATGTTGCATCAGGGACATCAGAGCA
TACACGAGTTGTCATTGAGCATGGT
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