CF509853

Overview
NameCF509853
Unique NameCF509853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length344
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7584 contig Csv1_Contig7584:619..962. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF509853 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.788e-18
Identity = 55/119 (46.22%), Postives = 71/119 (59.66%), Query Frame = 1 
Query:    1 VDTKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSK---SYGYGYNXXXXXXXXXXXXXXXEVGVVPDGSSAMTDITNPYGKGV--GVEAGNQTVVQISAADREARVLR 342
            VD K+E+ EQNSSGTDGVVPV+ R V      VN+ CF++DF G     +YG GYN               EVGVVPDG S + D++ PYG     G + G Q  V +++A+REARV+R
Sbjct:  190 VDPKVESLEQNSSGTDGVVPVENRTVRI--PTVNENCFEMDFTGGSKGFTYGGGYN----CISHSVSSSSMEVGVVPDGGS-VADVSYPYGGPATSGADPGTQRAVPLTSAEREARVMR 301
The following BLAST results are available for this feature:
BLAST of CF509853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COL4_ARATH4.788e-1846.22Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-361 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509853 ID=CF509853; Name=CF509853; organism=Citrus sinensis; type=EST; length=344bp
GTGGATACGAAGCTAGAAGCCCAGGAGCAAAACAGTTCGGGCACTGACGG
TGTTGTTCCCGTACAAACCAGAAACGTTAACGCTAACGGCCATTTGGTCA
ACGATGCATGCTTTGACCTCGATTTTCCAGGCTCCAAATCTTACGGTTAT
GGCTACAACTCTCACTCGCAGTGCCTCAGTCAGAGTGTGTCGTCGTCATC
GTTGGAGGTGGGAGTGGTGCCAGATGGAAGTAGTGCGATGACGGACATAA
CGAATCCGTACGGCAAAGGAGTGGGGGTGGAGGCAGGGAATCAGACGGTG
GTGCAGATTTCGGCAGCGGATAGGGAGGCGAGGGTGTTGAGGTA
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