CF509854

Overview
NameCF509854
Unique NameCF509854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509854 vs. ExPASy Swiss-Prot
Match: DGDG2_LOTJA (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Lotus japonicus GN=DGD2 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.105e-76
Identity = 134/162 (82.72%), Postives = 146/162 (90.12%), Query Frame = 1
Query:  109 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQHETYVRRWLEERTGFTSTFDIRFYPGKFAIDKRSILGVGDISEVISDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRL 594
            K+QHIAIFTTASLPWLTGTAVNPLFRAAYL+KDGE  VTLVIPWLSL DQ LVYP NITF SP +HE Y+R+WLEER GFTS F I+FYPGKF+ DKRSIL VGDISEVI D+ ADIAVLEEPEHLTWFHHGKRWKTKFR V+GI+HTNYLEYVKREKNG++
Sbjct:    3 KKQHIAIFTTASLPWLTGTAVNPLFRAAYLSKDGERDVTLVIPWLSLKDQALVYPNNITFASPSEHEKYIRQWLEERVGFTSGFSIKFYPGKFSRDKRSILAVGDISEVIPDKEADIAVLEEPEHLTWFHHGKRWKTKFRLVIGIIHTNYLEYVKREKNGQM 164          
BLAST of CF509854 vs. ExPASy Swiss-Prot
Match: DGDG2_SOYBN (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Glycine max GN=DGD2 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 3.554e-75
Identity = 131/160 (81.88%), Postives = 144/160 (90.00%), Query Frame = 1
Query:  109 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQHETYVRRWLEERTGFTSTFDIRFYPGKFAIDKRSILGVGDISEVISDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNG 588
            K++HIAIFTTASLPWLTGTAVNPLFRAAYLAK GE  VTLVIPWLSL DQ+LVYP NITF SP +HE Y+ +WLEER GFTS F I+FYPGKF+ DKRSIL VGDISE+I D+VADIAVLEEPEHLTW+HHGKRWKTKFR V+GI+HTNYLEYVKREKNG
Sbjct:    3 KKEHIAIFTTASLPWLTGTAVNPLFRAAYLAKSGERDVTLVIPWLSLKDQRLVYPNNITFASPSEHEKYICQWLEERVGFTSGFSIQFYPGKFSRDKRSILAVGDISEIIPDKVADIAVLEEPEHLTWYHHGKRWKTKFRLVIGIIHTNYLEYVKREKNG 162          
BLAST of CF509854 vs. ExPASy Swiss-Prot
Match: DGDG2_ARATH (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Arabidopsis thaliana GN=DGD2 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 5.131e-74
Identity = 129/166 (77.71%), Postives = 146/166 (87.95%), Query Frame = 1
Query:   97 LMDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQHETYVRRWLEERTGFTSTFDIRFYPGKFAIDKRSILGVGDISEVISDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRL 594
            + ++++QHIAIFTTAS+PWLTGTAVNPLFRAAYLA DGE RVTLVIPWL+L  QKLVYP +ITF+SP + E YVR+WLEER  F   F+IRFYPGKFAIDKRSIL VGDIS+ I DE ADIAVLEEPEHLTWFHHG++WKTKF YV+GIVHTNYLEYVKREK GR+
Sbjct:    1 MTNQQEQHIAIFTTASIPWLTGTAVNPLFRAAYLANDGERRVTLVIPWLTLKHQKLVYPNSITFSSPSEQEAYVRQWLEERVSFRLAFEIRFYPGKFAIDKRSILPVGDISDAIPDEEADIAVLEEPEHLTWFHHGQKWKTKFNYVIGIVHTNYLEYVKREKQGRV 166          
BLAST of CF509854 vs. ExPASy Swiss-Prot
Match: DGDG1_ARATH (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Arabidopsis thaliana GN=DGD1 PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.186e-62
Identity = 108/161 (67.08%), Postives = 133/161 (82.61%), Query Frame = 1
Query:  112 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQHETYVRRWLEERTGFTSTFDIRFYPGKFAIDKRSILGVGDISEVISDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRL 594
            ++H+AI TTASLPW+TGTAVNPLFRAAYLAK  +  VTLV+PWL   DQ+LVYP N+TF+SP++ E+Y+R+WLEER GF + F I FYPGKF+ ++RSI   GD S+ IS + ADIA+LEEPEHL W++HGKRW  KF +VVGIVHTNYLEY+KREKNG L
Sbjct:  343 KRHVAIVTTASLPWMTGTAVNPLFRAAYLAKAAKQSVTLVVPWLCESDQELVYPNNLTFSSPEEQESYIRKWLEERIGFKADFKISFYPGKFSKERRSIFPAGDTSQFISSKDADIAILEEPEHLNWYYHGKRWTDKFNHVVGIVHTNYLEYIKREKNGAL 503          
BLAST of CF509854 vs. ExPASy Swiss-Prot
Match: DGDG1_SOYBN (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Glycine max GN=DGD1 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 4.506e-62
Identity = 106/161 (65.84%), Postives = 130/161 (80.75%), Query Frame = 1
Query:  112 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQHETYVRRWLEERTGFTSTFDIRFYPGKFAIDKRSILGVGDISEVISDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRL 594
            ++H+AI TTASLPW+TGTAVNPLFRAAYL++  + +VTL++PWL   DQ+LVYP N+TFTSP++ E Y+R WLEER GF + F I FYPGKF+  +RSI+  GD S+ I    ADIA+LEEPEHL W+HHGKRW  KF +VVGIVHTNYLEY+KREKNG L
Sbjct:  310 ERHVAIVTTASLPWMTGTAVNPLFRAAYLSQSAKQKVTLLVPWLCKSDQELVYPSNLTFTSPEEQEAYIRSWLEERIGFKADFKISFYPGKFSEARRSIIPAGDTSQFIPSRDADIAILEEPEHLNWYHHGKRWTDKFNHVVGIVHTNYLEYIKREKNGAL 470          
BLAST of CF509854 vs. ExPASy Swiss-Prot
Match: DGDG1_LOTJA (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Lotus japonicus GN=DGD1 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 8.497e-61
Identity = 104/161 (64.60%), Postives = 130/161 (80.75%), Query Frame = 1
Query:  112 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQHETYVRRWLEERTGFTSTFDIRFYPGKFAIDKRSILGVGDISEVISDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRL 594
            ++H+AI TTASLPW+TGTAVNPLFRAAYL++  + +VTL++PWL   DQ+LVYP N+TFTSP++ E Y+R WLEER GF + F I FYPGKF+  +RSI+  GD ++ I  + ADIA+LEEPEHL W+HHG RW  KF +VVGIVHTNYLEY+KREKNG L
Sbjct:  313 ERHVAIVTTASLPWMTGTAVNPLFRAAYLSQSEKQKVTLLVPWLCKSDQELVYPSNLTFTSPEEQEGYIRNWLEERIGFKADFKISFYPGKFSQARRSIIPAGDTAQFIPSKDADIAILEEPEHLNWYHHGTRWTDKFNHVVGIVHTNYLEYIKREKNGAL 473          
The following BLAST results are available for this feature:
BLAST of CF509854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DGDG2_LOTJA1.105e-7682.72Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
DGDG2_SOYBN3.554e-7581.88Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
DGDG2_ARATH5.131e-7477.71Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
DGDG1_ARATH1.186e-6267.08Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
DGDG1_SOYBN4.506e-6265.84Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
DGDG1_LOTJA8.497e-6164.60Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-362 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509854 ID=CF509854; Name=CF509854; organism=Citrus sinensis; type=EST; length=594bp
CGCAACTATTAATTGTATTCTCGTCAAGGTCAAGTGTTCTTATCTGAAAC
ACTGCTTCAGAAAAATCGAAAGGTATTATTGTATTTGAGCTGATGATTGA
TGGATAGGAAACAACAGCATATTGCTATATTTACAACTGCAAGTCTGCCT
TGGTTGACTGGGACAGCTGTGAATCCTCTGTTCCGTGCTGCCTATCTTGC
AAAAGATGGCGAAACAAGAGTTACTTTGGTGATTCCTTGGTTATCTTTGA
TAGATCAAAAACTAGTATATCCCGAAAACATCACTTTCACTTCCCCCAAA
CAGCATGAGACATATGTTCGTCGGTGGCTTGAGGAGAGGACTGGTTTTAC
ATCTACTTTTGATATACGCTTTTATCCTGGAAAGTTTGCAATAGATAAAA
GGAGCATTCTTGGTGTAGGAGACATATCGGAAGTCATCTCTGATGAAGTG
GCAGATATTGCTGTCCTTGAGGAGCCTGAGCATCTTACGTGGTTTCATCA
TGGGAAAAGATGGAAAACTAAATTCCGCTATGTTGTAGGAATTGTACACA
CCAATTACCTAGAATATGTCAAGAGAGAGAAGAATGGACGATTA
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