CF509855

Overview
NameCF509855
Unique NameCF509855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509855 vs. ExPASy Swiss-Prot
Match: KCS4_ARATH (3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 8.284e-101
Identity = 173/215 (80.47%), Postives = 198/215 (92.09%), Query Frame = 1
Query:   34 RIQHNRRLPDFLQSVNLKYVKLGYHYLISNLLTLCFIPLIIITSIQVSEMNIDDLRQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRKILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYRLRG 678
            +I+  R LPDFLQSVNLKYVKLGYHYLISNLLTLC  PL ++ S++ S+MN DDL+QLWIHLQ+NLVS++ICSAILVFGLTV++MTRPRPVYLVD+SCY PP +LKA Y +FMEHS+LTGDFD+S+LEFQRKILERSGLGE+TY PEAMH +PP+ SMAAAREEAEQVM+GALDNLF+NTNV PKDIGILVVNCSLFNPTPSLSAMIVNKY+LRG
Sbjct:   22 QIRQTRMLPDFLQSVNLKYVKLGYHYLISNLLTLCLFPLAVVISVEASQMNPDDLKQLWIHLQYNLVSIIICSAILVFGLTVYVMTRPRPVYLVDFSCYLPPDHLKAPYARFMEHSRLTGDFDDSALEFQRKILERSGLGEDTYVPEAMHYVPPRISMAAAREEAEQVMFGALDNLFANTNVKPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRG 236          
BLAST of CF509855 vs. ExPASy Swiss-Prot
Match: KCS9_ARATH (3-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana GN=KCS9 PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.340e-87
Identity = 147/210 (70.00%), Postives = 180/210 (85.71%), Query Frame = 1
Query:   49 RRLPDFLQSVNLKYVKLGYHYLISNLLTLCFIPLIIITSIQVSEMNIDDLRQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRKILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYRLRG 678
            R+LP+FLQSVN+KYVKLGYHYLI++L  LC +PL+ +   ++S +  DDL Q+W+HLQ+NLV+ +  SA+ +FG TV+IM+RPR VYLVDYSCY PP +L+  Y KFM+HSKL  DF+ESSLEFQRKILERSGLGEETY PEA+H IPP+P+M AAREE+EQVM+GALD LF NT +NP+DIG+LVVNCSLFNPTPSLSAMIVNKY+LRG
Sbjct:   23 RKLPNFLQSVNMKYVKLGYHYLITHLFKLCLVPLMAVLVTEISRLTTDDLYQIWLHLQYNLVAFIFLSALAIFGSTVYIMSRPRSVYLVDYSCYLPPESLQVKYQKFMDHSKLIEDFNESSLEFQRKILERSGLGEETYLPEALHCIPPRPTMMAAREESEQVMFGALDKLFENTKINPRDIGVLVVNCSLFNPTPSLSAMIVNKYKLRG 232          
BLAST of CF509855 vs. ExPASy Swiss-Prot
Match: KCS11_ARATH (3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 3.170e-76
Identity = 133/211 (63.03%), Postives = 169/211 (80.09%), Query Frame = 1
Query:   46 NRRLPDFLQSVNLKYVKLGYHYLISNLLTLCFIPLIIITSIQVSEMNIDDLRQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRKILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYRLRG 678
            +R LPDF +SV LKYVKLGYHYLI++ + L   PL+++ + Q+S  ++ DLR LW HLQ+NL+SVV+CS +LVF +T++ MTRPRPVYLV++SC+KP  + K +   FM+ SKLTG F E +LEFQRKIL+RSGLGE TY PEA+  +PP P M  AR+EAE VM+GA+D L + TNVNPKDIGIL+VNCSLFNPTPSLSAM+VN Y+LRG
Sbjct:   14 DRNLPDFKKSVKLKYVKLGYHYLITHGMYLFLSPLVLVIAAQISTFSVTDLRSLWEHLQYNLISVVVCSMLLVFLMTIYFMTRPRPVYLVNFSCFKPDESRKCTKKIFMDRSKLTGSFTEENLEFQRKILQRSGLGESTYLPEAVLNVPPNPCMKEARKEAETVMFGAIDELLAKTNVNPKDIGILIVNCSLFNPTPSLSAMVVNHYKLRG 224          
BLAST of CF509855 vs. ExPASy Swiss-Prot
Match: KCS2_ARATH (Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis thaliana GN=KCS2 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 6.625e-66
Identity = 119/197 (60.41%), Postives = 153/197 (77.66%), Query Frame = 1
Query:   88 YVKLGYHYLISNLLTLCFIPLIIITSIQVSEMNIDDLRQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRKILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYRLRG 678
            YVKLGYHYLI++   L F+PL+ +  + VS ++++ L+     L +N    +    + + G  VF M+RPR +YL+DYSCY PP + K SY KFM +S L  DF E+SLEFQRKIL RSGLGEETY P+++H+IPP+P+MAAAREEAEQV++GALDNLF NT +NP++IG+LVVNCSLFNPTPSLSAMIVNKY+LRG
Sbjct:   15 YVKLGYHYLITHFFKLMFLPLMAVLFMNVSLLSLNHLQ-----LYYNSTGFIFVITLAIVGSIVFFMSRPRSIYLLDYSCYLPPSSQKVSYQKFMNNSSLIQDFSETSLEFQRKILIRSGLGEETYLPDSIHSIPPRPTMAAAREEAEQVIFGALDNLFENTKINPREIGVLVVNCSLFNPTPSLSAMIVNKYKLRG 206          
BLAST of CF509855 vs. ExPASy Swiss-Prot
Match: KCS19_ARATH (3-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana GN=KCS19 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.019e-63
Identity = 119/208 (57.21%), Postives = 153/208 (73.56%), Query Frame = 1
Query:   55 LPDFLQSVNLKYVKLGYHYLISNLLTLCFIPLIIITSIQVSEMNIDDLRQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRKILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYRLRG 678
            LP+FL SV LKYVKLGYHYLISN L +  +PL+  T   +S   I+DL  L+  L+F+ +S  + +A+L+   T +  TRPR V+L+D+SCYKP  +L  + + FM+ S+  G F E +L FQ+KILERSGLG++TYFPEA+  +PP P M  AR+EAE VM+GA+D +   T V PKDIGILVVNCSLFNPTPSLSAMIVNKY+LRG
Sbjct:   28 LPNFLLSVRLKYVKLGYHYLISNALYILLLPLLAATIANLSSFTINDLSLLYNTLRFHFLSATLATALLISLSTAYFTTRPRRVFLLDFSCYKPDPSLICTRETFMDRSQRVGIFTEDNLAFQQKILERSGLGQKTYFPEALLRVPPNPCMEEARKEAETVMFGAIDAVLEKTGVKPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRG 235          
BLAST of CF509855 vs. ExPASy Swiss-Prot
Match: KCS17_ARATH (3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.527e-62
Identity = 117/212 (55.19%), Postives = 161/212 (75.94%), Query Frame = 1
Query:   46 NRRLPDFLQSVNLKYVKLGYHYLISNLLTLCFIPLIIITSIQVSEMNIDDLRQLWIHL-QFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRKILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYRLRG 678
            N++LP+FL SV LKYVKLGYHYLISN + +  +P+ ++ +   S  ++ DL  L+ HL +F+ +S  + +A+L+F  T++  TRPR ++L+D++CYKP  +L  + + FM+ S+  G F E +L FQ+KILERSGLG++TYFPEA+  +PP P M+ AR+EAE VM+GA+D +   T VNPKDIGILVVNCSLFNPTPSLSAMIVNKY+LRG
Sbjct:   19 NKKLPNFLLSVRLKYVKLGYHYLISNAVYILILPVGLLAATS-SSFSLTDLTLLYNHLLKFHFLSSTLFAALLIFLTTLYFTTRPRRIFLLDFACYKPDSSLICTRETFMDRSQRVGIFTEDNLAFQQKILERSGLGQKTYFPEALLRVPPNPCMSEARKEAETVMFGAIDAVLEKTGVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRG 229          
BLAST of CF509855 vs. ExPASy Swiss-Prot
Match: KCS6_ARATH (3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.429e-60
Identity = 108/207 (52.17%), Postives = 151/207 (72.95%), Query Frame = 1
Query:   55 LPDFLQSVNLKYVKLGYHYLISNLLTLCFIPLIIITSIQVSEMNIDDLRQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRKILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYRLR 675
            +P+F  SV LKYVKLGY YL+++ L+   IP++ I ++++  M  +++  +W  LQF+LV V+  S  ++F  TV+ M++PR +YLVDYSCYKPP   +  +  FMEHS+L       S+EFQ +ILERSGLGEET  P A+H IPP P+M AAR EA+ V++ A+D+LF  T + PKD+ IL+VNCSLF+PTPSLSAM++NKY+LR
Sbjct:    6 MPEFSSSVKLKYVKLGYQYLVNHFLSFLLIPIMAIVAVELLRMGPEEILNVWNSLQFDLVQVLCSSFFVIFISTVYFMSKPRTIYLVDYSCYKPPVTCRVPFATFMEHSRLILKDKPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMDAARSEAQMVIFEAMDDLFKKTGLKPKDVDILIVNCSLFSPTPSLSAMVINKYKLR 212          
BLAST of CF509855 vs. ExPASy Swiss-Prot
Match: KCS5_ARATH (3-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana GN=KCS5 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.159e-60
Identity = 111/207 (53.62%), Postives = 150/207 (72.46%), Query Frame = 1
Query:   55 LPDFLQSVNLKYVKLGYHYLISNLLTLCFIPLIIITSIQVSEMNIDDLRQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRKILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYRLR 675
            + DF  SV LKYVKLGY YLI+N LTL  IP+I   +I++  M  +++  +   L F L+ ++  S +++F  TV+ M++PR VYLVDYSCYKPP   +  +  FMEHS+L    +  S+EFQ +ILERSGLGEET  P A+H IPP P+M +AR EA+ V++ A+++LF NT + PKDI IL+VNCSLF+PTPSLSAMI+NKY+LR
Sbjct:    1 MSDFSSSVKLKYVKLGYQYLINNFLTLLLIPVIATVAIELLRMGPEEILSVLNSLHFELLHILCSSFLIIFVSTVYFMSKPRTVYLVDYSCYKPPVTCRVPFSSFMEHSRLILKDNPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMESARNEAQMVIFTAMEDLFKNTGLKPKDIDILIVNCSLFSPTPSLSAMIINKYKLR 207          
BLAST of CF509855 vs. ExPASy Swiss-Prot
Match: KCS10_ARATH (3-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana GN=FDH PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.362e-55
Identity = 103/216 (47.69%), Postives = 156/216 (72.22%), Query Frame = 1
Query:   37 IQHNRRLPDFLQSVNLKYVKLGYHYLISNLLTLCFIP-LIIITSIQVSEMNIDDL-RQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRKILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYRLRG 678
            ++  RRLPDFLQSVNLKYVKLGYHYLI++ + L  IP L+++ S +V  ++ +++ ++LW    ++L +V+    + V    V+ M+RPR VYL+D++CYKP    K + ++F+E ++ +G FDE +L F+++IL+ SG+G+ETY P ++ +     +M   REEA  V++GALD LF  T V PKD+G+LVVNCS+FNPTPSLSAM++N Y++RG
Sbjct:   33 VRVRRRLPDFLQSVNLKYVKLGYHYLINHAVYLATIPVLVLVFSAEVGSLSREEIWKKLW---DYDLATVIGFFGVFVLTACVYFMSRPRSVYLIDFACYKPSDEHKVTKEEFIELARKSGKFDEETLGFKKRILQASGIGDETYVPRSISSSENITTMKEGREEASTVIFGALDELFEKTRVKPKDVGVLVVNCSIFNPTPSLSAMVINHYKMRG 245          
BLAST of CF509855 vs. ExPASy Swiss-Prot
Match: KCS18_ARATH (3-ketoacyl-CoA synthase 18 OS=Arabidopsis thaliana GN=FAE1 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.410e-54
Identity = 110/213 (51.64%), Postives = 144/213 (67.61%), Query Frame = 1
Query:   67 LQSVNLKYVKLGYHYLISNLLTLCFIPLIIITSIQVSEMNIDDLRQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFME----------HSKLTGDFDESSLEFQRKILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYRLR 675
            + SVN   VKL Y Y+++N   LC  PL    + + S + I+DL     +LQ NL++V +  A  VFGL ++I+TRP PVYLVDYSCY PP +LK S  K M+           S+     D SSL+F RKI ERSGLG+ETY PE +  +PP+ + AA+REE E+V+ GAL+NLF NT VNP++IGILVVN S+FNPTPSLSAM+VN ++LR
Sbjct:    1 MTSVN---VKLLYRYVLTNFFNLCLFPLTAFLAGKASRLTINDLHNFLSYLQHNLITVTLLFAFTVFGLVLYIVTRPNPVYLVDYSCYLPPPHLKVSVSKVMDIFYQIRKADTSSRNVACDDPSSLDFLRKIQERSGLGDETYSPEGLIHVPPRKTFAASREETEKVIIGALENLFENTKVNPREIGILVVNSSMFNPTPSLSAMVVNTFKLR 210          
The following BLAST results are available for this feature:
BLAST of CF509855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
KCS4_ARATH8.284e-10180.473-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana ... [more]
KCS9_ARATH2.340e-8770.003-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana ... [more]
KCS11_ARATH3.170e-7663.033-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana... [more]
KCS2_ARATH6.625e-6660.41Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis ... [more]
KCS19_ARATH4.019e-6357.213-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana... [more]
KCS17_ARATH1.527e-6255.193-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana... [more]
KCS6_ARATH1.429e-6052.173-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana ... [more]
KCS5_ARATH4.159e-6053.623-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana ... [more]
KCS10_ARATH2.362e-5547.693-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana... [more]
KCS18_ARATH3.410e-5451.643-ketoacyl-CoA synthase 18 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-363 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509855 ID=CF509855; Name=CF509855; organism=Citrus sinensis; type=EST; length=679bp
GTGGTAGCTGGCGGCGGTGCTCCGGTTGGTGTTCGGATCCAACACAATAG
AAGGTTACCCGATTTCTTACAAAGCGTGAATCTTAAGTACGTAAAACTTG
GGTACCATTACCTCATTTCAAATCTATTAACACTATGTTTCATTCCCTTA
ATTATAATCACCTCTATTCAAGTTTCGGAAATGAACATTGATGATCTACG
TCAGTTGTGGATTCACCTTCAGTTCAATCTCGTAAGCGTTGTTATTTGCT
CAGCCATTCTTGTTTTTGGCTTAACGGTTTTTATCATGACTCGGCCAAGA
CCGGTTTATTTAGTTGATTACTCCTGTTACAAACCACCCCATAATCTCAA
AGCCTCGTATGATAAATTCATGGAGCATTCGAAGTTAACAGGGGATTTTG
ATGAGTCCTCTCTCGAGTTCCAGCGCAAGATTCTTGAGCGTTCTGGGCTT
GGAGAGGAGACTTATTTCCCTGAAGCTATGCATGCTATTCCACCTAAGCC
ATCAATGGCTGCTGCCAGAGAAGAGGCTGAGCAGGTCATGTATGGTGCGT
TGGATAACCTTTTTAGTAATACAAATGTTAATCCCAAAGATATTGGTATT
CTTGTTGTCAATTGTAGTTTGTTTAATCCTACACCGTCTTTGTCAGCTAT
GATTGTGAATAAGTATAGACTGCGAGGTA
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