CF509856

Overview
NameCF509856
Unique NameCF509856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13631 contig Csv1_Contig13631:67..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509856 vs. ExPASy Swiss-Prot
Match: SUGT1_DICDI (Protein SUGT1 homolog OS=Dictyostelium discoideum GN=sugt1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.271e-14
Identity = 55/192 (28.65%), Postives = 86/192 (44.79%), Query Frame = 2
Query:   98 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE---------------TGELQKQPLETGPTNVVSTNNVQPAT---------NISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQ 601
            F+D+ ++ A   Y +A     N+AE F  R+Q   KL N  EA++D N +I+L+ + SK Y +K   C +LEE++TA    EKG S+   +S F   I++ +  I                  T   Q     T PT + +T+N    T         N ++  +  T  D +        +  K RHE+YQ
Sbjct:   11 FVDEQYDEALKCYDKACLELSNNAEAFFKRSQCHSKLSNLKEALSDINTSIKLDSNNSKYYLKKGQLCFELEEFDTALKTFEKGQSIDSENSSFKTWIRKSKAEIQSNPTTTTTTTPTPTPTPTPAPQPVTTTTNPTPIPTTSNTTTTTNNNNNNNNNNNNNNNNNNTTTDSTTTKLPIPSSGNKVRHEWYQ 202          
BLAST of CF509856 vs. ExPASy Swiss-Prot
Match: PPP5_SOLLC (Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.132e-13
Identity = 36/100 (36.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:  113 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 412
            +  A DLY+QAIE++  +A  +A+RA A  KL+ +  A+ D  RAIE++P  SK Y+R+  A + + +++ A    ++   L P D   T  +KECE+ +
Sbjct:   30 YSQAIDLYTQAIELNGENAVYYANRAFAHTKLEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPNDPDATKKLKECEKAV 129          
BLAST of CF509856 vs. ExPASy Swiss-Prot
Match: SGTB_RAT (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Rattus norvegicus GN=Sgtb PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.090e-13
Identity = 46/161 (28.57%), Postives = 83/161 (51.55%), Query Frame = 2
Query:  104 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVST--NN---VQPATNISSTEDVETVMDVSNEAAMAAPA 571
            ++ +  A D Y+QAIE+ PN+A  + +RA A  KL ++T+A+ D  +AI ++   SKAY R   A   + ++E A  + +K   L P +  + + +K  E+++ E +      P  TG T  +++  NN   +  A ++     V+ +M      A+  PA
Sbjct:   98 EENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVS-----SPTGTGLTFDMASLINNPAFITMAASLMQNPQVQQLMSGMMTNAIGGPA 253          
BLAST of CF509856 vs. ExPASy Swiss-Prot
Match: SGTB_HUMAN (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.112e-13
Identity = 46/161 (28.57%), Postives = 83/161 (51.55%), Query Frame = 2
Query:  104 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVST--NN---VQPATNISSTEDVETVMDVSNEAAMAAPA 571
            ++ +  A D Y+QAIE+ PN+A  + +RA A  KL ++T+A+ D  +AI ++   SKAY R   A   L ++E A  + +K   L P +  + + +K  E+++ E +      P  TG +  +++  NN   +  A ++     V+ +M      A+  PA
Sbjct:   98 EENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVS-----SPTGTGLSFDMASLINNPAFISMAASLMQNPQVQQLMSGMMTNAIGGPA 253          
BLAST of CF509856 vs. ExPASy Swiss-Prot
Match: SGTB_MOUSE (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Mus musculus GN=Sgtb PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.190e-12
Identity = 45/161 (27.95%), Postives = 83/161 (51.55%), Query Frame = 2
Query:  104 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVST--NN---VQPATNISSTEDVETVMDVSNEAAMAAPA 571
            ++ +  A D Y+QAIE+ PN+A  + +RA A  KL ++T+A+ D  +AI ++   SKAY R   A   + ++E A  + +K   L P +  + + +K  E+++ E +      P  TG +  +++  NN   +  A ++     V+ +M      A+  PA
Sbjct:   98 EENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVS-----SPTGTGLSFDMASLINNPAFITMAASLMQNPQVQQLMSGMMTNAIGGPA 253          
BLAST of CF509856 vs. ExPASy Swiss-Prot
Match: PPP5_ARATH (Serine/threonine-protein phosphatase 5 OS=Arabidopsis thaliana GN=PAPP5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.554e-12
Identity = 35/100 (35.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:  113 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 412
            +  A DLY++AIE++ N+A  +A+RA A  KL+ +  A+ DA++AIE++   SK Y+R+  A + + +++ A    ++   L+P D   T  +KECE+ +
Sbjct:   29 YSSAIDLYTKAIELNSNNAVYWANRAFAHTKLEEYGSAIQDASKAIEVDSRYSKGYYRRGAAYLAMGKFKDALKDFQQVKRLSPNDPDATRKLKECEKAV 128          
BLAST of CF509856 vs. ExPASy Swiss-Prot
Match: PPT1_SCHPO (Serine/threonine-protein phosphatase T OS=Schizosaccharomyces pombe GN=ppt1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.522e-12
Identity = 35/97 (36.08%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  122 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 412
            A DLY++AIE+   +A L+++R+ A +K +++  A+ DA++AIE +P  +KAY+R+ATA + + + + A     K  +LAP D      ++ECE+ +
Sbjct:   24 AIDLYTKAIELDSTNAILYSNRSLAHLKSEDYGLAINDASKAIECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKALALAPSDPAARKKLRECEQLV 120          
BLAST of CF509856 vs. ExPASy Swiss-Prot
Match: SGTA_BOVIN (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Bos taurus GN=SGTA PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 39/102 (38.24%), Postives = 54/102 (52.94%), Query Frame = 2
Query:  113 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 418
            FE A   Y +AIE++P +A  F +RA A  KL N+  AV D  RAI ++PS SKAY R   A   L ++  A     K   L P +  + + +K  E R+ E
Sbjct:  107 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELDPDNETYKSNLKVAELRLRE 208          
BLAST of CF509856 vs. ExPASy Swiss-Prot
Match: SGTA_RAT (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Rattus norvegicus GN=Sgta PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 38/102 (37.25%), Postives = 55/102 (53.92%), Query Frame = 2
Query:  113 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 418
            FE A  LY +AIE++P +A  F +RA A  KL N+  AV D  RAI ++P  SKAY R   A   L ++  A    +K   L P +  + + +K  E ++ E
Sbjct:  107 FEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELDPDNDTYKSNLKIAELKLRE 208          
BLAST of CF509856 vs. ExPASy Swiss-Prot
Match: SGTA_MOUSE (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Mus musculus GN=Sgta PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 38/102 (37.25%), Postives = 55/102 (53.92%), Query Frame = 2
Query:  113 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 418
            FE A  LY +AIE++P +A  F +RA A  KL N+  AV D  RAI ++P  SKAY R   A   L ++  A    +K   L P +  + + +K  E ++ E
Sbjct:  108 FEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELDPDNDTYKSNLKIAELKLRE 209          
The following BLAST results are available for this feature:
BLAST of CF509856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SUGT1_DICDI1.271e-1428.65Protein SUGT1 homolog OS=Dictyostelium discoideum ... [more]
PPP5_SOLLC3.132e-1336.00Serine/threonine-protein phosphatase 5 OS=Solanum ... [more]
SGTB_RAT4.090e-1328.57Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTB_HUMAN9.112e-1328.57Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTB_MOUSE1.190e-1227.95Small glutamine-rich tetratricopeptide repeat-cont... [more]
PPP5_ARATH1.554e-1235.00Serine/threonine-protein phosphatase 5 OS=Arabidop... [more]
PPT1_SCHPO4.522e-1236.08Serine/threonine-protein phosphatase T OS=Schizosa... [more]
SGTA_BOVIN3.828e-1138.24Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTA_RAT5.000e-1137.25Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTA_MOUSE5.000e-1137.25Small glutamine-rich tetratricopeptide repeat-cont... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-364 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509856 ID=CF509856; Name=CF509856; organism=Citrus sinensis; type=EST; length=612bp
CTCACTCGCAAGTTGTTCTCTTTCTTTCTGGACTCTTCGATTAGCCAACT
GTAGTCTCTAATGGCAACCGATCTGGAGAAGAAAGCCAAAGAGGCGGTTC
ATCGACGACTACTTCGAGCTCGCCTACGATCTCTACTCGCAAGCCATTGA
GATTAGCCCTAATAGCGCTGAGCTCTTCGCCGACCGCGCTCAAGCCAGCA
TCAAACTCCAAAATTTCACTGAGGCTGTTGCGGATGCGAACCGAGCAATT
GAGTTGGAGCCTTCAATGTCTAAAGCCTATTGGCGTAAAGCCACCGCTTG
CATGAAGCTTGAAGAATATGAAACGGCTAAGGTGGCACTAGAAAAAGGTG
CTTCTCTAGCTCCAGGAGATTCGAGATTTACCAACTTAATCAAAGAATGT
GAGGAGCGCATAGCAGAGGAAACTGGTGAGTTACAAAAGCAGCCTTTGGA
AACAGGCCCAACAAATGTTGTGTCAACTAACAACGTCCAGCCTGCGACGA
ACATTTCCTCAACTGAGGATGTTGAGACAGTGATGGATGTTTCCAATGAG
GCTGCGATGGCTGCACCAGCCAGACCAAAATACAGGCATGAATTTTACCA
GAAGCCTGAGGA
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