CF509859

Overview
NameCF509859
Unique NameCF509859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF509859 vs. ExPASy Swiss-Prot
Match: ARP7_ARATH (Actin-related protein 7 OS=Arabidopsis thaliana GN=ARP7 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 4.282e-41
Identity = 79/101 (78.22%), Postives = 90/101 (89.11%), Query Frame = 3 
Query:  171 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRMLEDGSSSVDNSTSV-EDVTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPK 470
            MEA VVDAGSK LKAG AIPDQ+P+M+IPSQMKRM++DGSSS DN T+V EDVT+DP+ RG IRDWDAMEDLL +V+Y GLGWEEGNEG ILFTDPLC+PK
Sbjct:    1 MEALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKRMVDDGSSSADNPTTVFEDVTLDPIERGLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPK 101
[Close]
BLAST of CF509859 vs. ExPASy Swiss-Prot
Match: ARP7_ORYSJ (Actin-related protein 7 OS=Oryza sativa subsp. japonica GN=ARP7 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 6.852e-31
Identity = 66/100 (66.00%), Postives = 84/100 (84.00%), Query Frame = 3 
Query:  171 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRMLEDGSSSVDNSTSVEDVTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPK 470
            MEA VVDAGSKLLKAG A+PDQ+PS+V+PS+MK  +EDG   + +   VE+V V PVVRGF++DWDAMEDLL++VLY+ +GWE G+EGQILFT+PL +PK
Sbjct:    1 MEAVVVDAGSKLLKAGIALPDQSPSLVMPSKMKLEVEDGQ--MGDGAVVEEV-VQPVVRGFVKDWDAMEDLLNYVLYSNIGWEIGDEGQILFTEPLFTPK 97
[Close]
BLAST of CF509859 vs. ExPASy Swiss-Prot
Match: ARP7_ORYSI (Actin-related protein 7 OS=Oryza sativa subsp. indica GN=ARP7 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 6.852e-31
Identity = 66/100 (66.00%), Postives = 84/100 (84.00%), Query Frame = 3 
Query:  171 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRMLEDGSSSVDNSTSVEDVTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPK 470
            MEA VVDAGSKLLKAG A+PDQ+PS+V+PS+MK  +EDG   + +   VE+V V PVVRGF++DWDAMEDLL++VLY+ +GWE G+EGQILFT+PL +PK
Sbjct:    1 MEAVVVDAGSKLLKAGIALPDQSPSLVMPSKMKLEVEDGQ--MGDGAVVEEV-VQPVVRGFVKDWDAMEDLLNYVLYSNIGWEIGDEGQILFTEPLFTPK 97
The following BLAST results are available for this feature:
BLAST of CF509859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ARP7_ARATH4.282e-4178.22Actin-related protein 7 OS=Arabidopsis thaliana GN... [more]
ARP7_ORYSJ6.852e-3166.00Actin-related protein 7 OS=Oryza sativa subsp. jap... [more]
ARP7_ORYSI6.852e-3166.00Actin-related protein 7 OS=Oryza sativa subsp. ind... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-367 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509859 ID=CF509859; Name=CF509859; organism=Citrus sinensis; type=EST; length=471bp
TTCAAAATACCCAGCCCGCTAAACATTTATTTCAAGACCCTAGAAATTGA
ATCTACCAATTTGGGGTTTTGCAGTTGCAGATCCCATACACATATTATCA
TAGATAGTTAGATACTCTGTGAAGGGGTTTGCCAAATTTTGGTGATTACT
GAGCTCTGCCCGTCAGCAAAATGGAGGCTGCTGTGGTGGATGCTGGCTCG
AAGCTTCTCAAAGCGGGACCCGCCATCCCAGACCAAGCTCCCTCCATGGT
GATTCCTAGCCAAATGAAGCGGATGCTTGAAGATGGGTCATCTTCTGTTG
ATAATTCAACTTCAGTAGAGGATGTGACTGTGGATCCTGTTGTGAGAGGC
TTTATTAGAGACTGGGATGCCATGGAGGATTTGTTGCATCATGTTCTGTA
CGCTGGGCTTGGATGGGAAGAGGGTAATGAAGGGCAGATATTGTTCACCG
ATCCACTTTGCTCTCCCAAGG
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